Detailed information NTG0182197

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: B1200_RS25490
• Genome accession: NZ_CP019903
• Coordinates: 4848137..4849129 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MDR_56
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4843137..4854129

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B1200_RS25465 (B1200_26150)	ygbN	4843793..4845157 (+)	1365	WP_000104432.1	GntP family transporter	-
B1200_RS25470 (B1200_26155)	-	4845195..4845431 (-)	237	WP_000562976.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
B1200_RS25475 (B1200_26160)	-	4845442..4846869 (-)	1428	WP_000863185.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
B1200_RS25480 (B1200_26165)	-	4846869..4847462 (-)	594	WP_000767730.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
B1200_RS25485 (B1200_26170)	-	4847609..4848016 (+)	408	WP_001208064.1	MarR family transcriptional regulator	-
B1200_RS25490 (B1200_26175)	rpoS	4848137..4849129 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
B1200_RS25495 (B1200_26180)	nlpD	4849192..4850286 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
B1200_RS25500 (B1200_26185)	pcm	4850471..4851097 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
B1200_RS25505 (B1200_26190)	surE	4851091..4851852 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
B1200_RS25510 (B1200_26195)	truD	4851833..4852882 (-)	1050	WP_000568955.1	tRNA pseudouridine(13) synthase TruD	-
B1200_RS25515 (B1200_26200)	ispF	4852879..4853358 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
B1200_RS25520 (B1200_26205)	ispD	4853358..4854068 (-)	711	WP_000246133.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=182197 B1200_RS25490 WP_000081550.1 4848137..4849129(-) (rpoS) [Escherichia coli strain MDR_56]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=182197 B1200_RS25490 WP_000081550.1 4848137..4849129(-) (rpoS) [Escherichia coli strain MDR_56]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715