Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   B1200_RS21535 Genome accession   NZ_CP019903
Coordinates   4064151..4065578 (+) Length   475 a.a.
NCBI ID   WP_072132999.1    Uniprot ID   -
Organism   Escherichia coli strain MDR_56     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4059151..4070578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1200_RS21505 (B1200_22110) yeeW 4059335..4059529 (+) 195 WP_000988600.1 DUF5983 family protein -
  B1200_RS29720 (B1200_22115) - 4059575..4059655 (+) 81 Protein_3942 hypothetical protein -
  B1200_RS29730 (B1200_22125) - 4060144..4060326 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  B1200_RS21515 (B1200_22130) tmaR 4060427..4060756 (-) 330 WP_000450409.1 DUF496 family protein -
  B1200_RS21520 (B1200_22135) yeeA 4060928..4061986 (-) 1059 WP_021513121.1 FUSC family protein -
  B1200_RS21525 (B1200_22140) sbmC 4062184..4062657 (-) 474 WP_001105390.1 DNA gyrase inhibitor SbmC -
  B1200_RS21530 (B1200_22145) dacD 4062776..4063942 (-) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  B1200_RS21535 (B1200_22150) sbcB 4064151..4065578 (+) 1428 WP_072132999.1 exodeoxyribonuclease I Machinery gene
  B1200_RS21540 (B1200_22155) tsuB 4065621..4065848 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  B1200_RS21545 (B1200_22160) tsuA 4065862..4066920 (-) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  B1200_RS21550 (B1200_22165) plaP 4067099..4068457 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  B1200_RS29735 yoeI 4068447..4068509 (-) 63 WP_010723108.1 membrane protein YoeI -
  B1200_RS21555 (B1200_22170) yeeY 4068724..4069653 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  B1200_RS21560 (B1200_22175) yeeZ 4069699..4070523 (-) 825 WP_032202495.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4720

>NTDB_id=182185 B1200_RS21535 WP_072132999.1 4064151..4065578(+) (sbcB) [Escherichia coli strain MDR_56]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=182185 B1200_RS21535 WP_072132999.1 4064151..4065578(+) (sbcB) [Escherichia coli strain MDR_56]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment