Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B1200_RS11245 Genome accession   NZ_CP019903
Coordinates   2169011..2169487 (-) Length   158 a.a.
NCBI ID   WP_001313574.1    Uniprot ID   -
Organism   Escherichia coli strain MDR_56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2164011..2174487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1200_RS11215 (B1200_11545) - 2165660..2166648 (+) 989 Protein_2039 IS630 family transposase -
  B1200_RS11220 (B1200_11555) - 2166727..2167219 (-) 493 Protein_2040 DUF5983 family protein -
  B1200_RS11225 (B1200_11560) - 2167216..2167593 (-) 378 WP_000854730.1 TA system toxin CbtA family protein -
  B1200_RS11230 (B1200_11565) - 2167640..2168014 (-) 375 WP_001285481.1 type IV toxin-antitoxin system YeeU family antitoxin -
  B1200_RS11235 (B1200_11570) - 2168064..2168708 (-) 645 WP_000086759.1 hypothetical protein -
  B1200_RS11240 (B1200_11575) - 2168727..2168948 (-) 222 WP_000692315.1 DUF987 domain-containing protein -
  B1200_RS11245 (B1200_11580) radC 2169011..2169487 (-) 477 WP_001313574.1 RadC family protein Machinery gene
  B1200_RS11250 (B1200_11585) - 2169503..2169976 (-) 474 WP_001313575.1 antirestriction protein -
  B1200_RS11255 (B1200_11590) - 2170070..2170315 (-) 246 WP_001164966.1 hypothetical protein -
  B1200_RS11260 (B1200_11595) - 2170315..2171136 (-) 822 WP_001234359.1 DUF932 domain-containing protein -
  B1200_RS11265 (B1200_11600) - 2171158..2172366 (-) 1209 WP_001352368.1 IS4-like element ISVsa5 family transposase -
  B1200_RS11275 (B1200_11605) - 2172574..2172807 (-) 234 WP_001213776.1 DUF905 family protein -
  B1200_RS11280 (B1200_11610) - 2172925..2173377 (-) 453 WP_000682723.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17749.42 Da        Isoelectric Point: 7.6152

>NTDB_id=182162 B1200_RS11245 WP_001313574.1 2169011..2169487(-) (radC) [Escherichia coli strain MDR_56]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=182162 B1200_RS11245 WP_001313574.1 2169011..2169487(-) (radC) [Escherichia coli strain MDR_56]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
TAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGGCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment