Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B1200_RS09465 Genome accession   NZ_CP019903
Coordinates   1818130..1818606 (+) Length   158 a.a.
NCBI ID   WP_078080954.1    Uniprot ID   -
Organism   Escherichia coli strain MDR_56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1813130..1823606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1200_RS09435 (B1200_09735) - 1813630..1814514 (+) 885 WP_000010383.1 GTPase -
  B1200_RS09440 (B1200_09745) - 1814717..1815397 (+) 681 WP_001282921.1 WYL domain-containing protein -
  B1200_RS09445 (B1200_09750) - 1815545..1816222 (+) 678 WP_001097301.1 hypothetical protein -
  B1200_RS09450 (B1200_09755) - 1816228..1816461 (+) 234 WP_001278293.1 DUF905 family protein -
  B1200_RS09455 (B1200_09760) - 1816551..1817369 (+) 819 WP_078080903.1 DUF932 domain-containing protein -
  B1200_RS09460 (B1200_09770) - 1817635..1818114 (+) 480 WP_001696591.1 antirestriction protein -
  B1200_RS09465 (B1200_09775) radC 1818130..1818606 (+) 477 WP_078080954.1 RadC family protein Machinery gene
  B1200_RS09470 (B1200_09780) - 1818693..1818914 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  B1200_RS09475 (B1200_09785) cbeA 1818994..1819368 (+) 375 WP_001285608.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  B1200_RS09480 (B1200_09790) - 1819415..1819792 (+) 378 WP_000854919.1 TA system toxin CbtA family protein -
  B1200_RS09485 (B1200_09795) - 1819789..1820277 (+) 489 WP_000777665.1 DUF5983 family protein -
  B1200_RS09490 (B1200_09800) - 1820297..1820494 (+) 198 WP_001403937.1 DUF957 domain-containing protein -
  B1200_RS30260 - 1820579..1820722 (+) 144 Protein_1722 hypothetical protein -
  B1200_RS31165 - 1820692..1820826 (+) 135 Protein_1723 transcriptional regulator -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17668.30 Da        Isoelectric Point: 6.9859

>NTDB_id=182157 B1200_RS09465 WP_078080954.1 1818130..1818606(+) (radC) [Escherichia coli strain MDR_56]
MQQLSFLPGEMTPGERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLITGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVIPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=182157 B1200_RS09465 WP_078080954.1 1818130..1818606(+) (radC) [Escherichia coli strain MDR_56]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACACCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTACCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCATCCCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399