Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B1200_RS04840 Genome accession   NZ_CP019903
Coordinates   928025..928693 (-) Length   222 a.a.
NCBI ID   WP_001318112.1    Uniprot ID   -
Organism   Escherichia coli strain MDR_56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 923025..933693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1200_RS04810 (B1200_04915) rfaQ 923203..924261 (-) 1059 WP_000360409.1 lipopolysaccharide core heptosyltransferase RfaQ -
  B1200_RS04815 (B1200_04920) waaA 924674..925951 (+) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  B1200_RS04820 (B1200_04925) coaD 925959..926438 (+) 480 WP_078080927.1 pantetheine-phosphate adenylyltransferase -
  B1200_RS04825 (B1200_04930) mutM 926477..927286 (-) 810 WP_001114537.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  B1200_RS04830 (B1200_04935) rpmG 927384..927551 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  B1200_RS04835 (B1200_04940) rpmB 927572..927808 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  B1200_RS04840 (B1200_04945) radC 928025..928693 (-) 669 WP_001318112.1 DNA repair protein RadC Machinery gene
  B1200_RS04845 (B1200_04950) coaBC 928865..930085 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  B1200_RS04850 (B1200_04955) dut 930063..930521 (+) 459 WP_000976070.1 dUTP diphosphatase -
  B1200_RS04855 (B1200_04960) slmA 930628..931224 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  B1200_RS04860 (B1200_04965) pyrE 931261..931902 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  B1200_RS04865 (B1200_04970) rph 931968..932684 (-) 717 WP_001247093.1 ribonuclease PH -
  B1200_RS04875 (B1200_04980) yicC 932811..933674 (+) 864 WP_000621330.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.36 Da        Isoelectric Point: 7.9755

>NTDB_id=182133 B1200_RS04840 WP_001318112.1 928025..928693(-) (radC) [Escherichia coli strain MDR_56]
MKNNAQLLMPREKMLRFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=182133 B1200_RS04840 WP_001318112.1 928025..928693(-) (radC) [Escherichia coli strain MDR_56]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAGGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAGTTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCTTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496