Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B1K54_RS29345 Genome accession   NZ_CP019798
Coordinates   6594357..6594986 (-) Length   209 a.a.
NCBI ID   WP_037915682.1    Uniprot ID   A0ABX3G064
Organism   Streptomyces sp. fd1-xmd     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6589357..6599986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS29330 (B1K54_29305) - 6590050..6590700 (-) 651 WP_078095435.1 NTP transferase domain-containing protein -
  B1K54_RS29335 (B1K54_29310) - 6590938..6592425 (+) 1488 WP_078095436.1 PLP-dependent aminotransferase family protein -
  B1K54_RS29340 (B1K54_29315) - 6592477..6594201 (-) 1725 WP_078096383.1 PP2C family protein-serine/threonine phosphatase -
  B1K54_RS29345 (B1K54_29320) vraR 6594357..6594986 (-) 630 WP_037915682.1 response regulator Regulator
  B1K54_RS29350 (B1K54_29325) - 6594983..6596266 (-) 1284 WP_078095437.1 sensor histidine kinase -
  B1K54_RS29355 (B1K54_29330) - 6596401..6597486 (+) 1086 WP_078096384.1 ABC transporter permease -
  B1K54_RS29360 (B1K54_29335) - 6597483..6598178 (+) 696 WP_060177681.1 ABC transporter ATP-binding protein -
  B1K54_RS29365 (B1K54_29340) - 6598319..6599122 (-) 804 WP_060177682.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 21991.38 Da        Isoelectric Point: 5.6784

>NTDB_id=182060 B1K54_RS29345 WP_037915682.1 6594357..6594986(-) (vraR) [Streptomyces sp. fd1-xmd]
MTIRLLLADDHPVVRAGLRAVLDTEADFAVVAEAATAERAVELAAREPVDVVLMDLQFGPGMHGSEATALITARPGAPRV
LVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADG
LSNQQISKQLFLSQATVKSHLVHVYAKLGVESRTAAVAAAATRRLIRTP

Nucleotide


Download         Length: 630 bp        

>NTDB_id=182060 B1K54_RS29345 WP_037915682.1 6594357..6594986(-) (vraR) [Streptomyces sp. fd1-xmd]
GTGACCATCCGTCTCCTGCTCGCCGACGACCACCCCGTGGTCCGGGCGGGCCTGCGCGCGGTGCTGGACACCGAGGCGGA
CTTCGCGGTGGTGGCCGAGGCGGCGACCGCCGAGCGGGCGGTGGAGCTGGCCGCCCGCGAACCGGTCGACGTCGTCCTCA
TGGACCTGCAGTTCGGGCCGGGCATGCACGGCTCCGAGGCGACGGCCCTGATCACCGCCCGCCCGGGCGCCCCCCGGGTG
CTGGTGCTCACCACGTACGACACGGACGCGGACATCCTGGCGGCGGTGGAGGCGGGCGCCTCGGGCTACCTGCTCAAGGA
CGCCCCGCCGGAAGAGCTGGCGGCGGCCGTGCGCACCGCCGCGGCGGGCCAGTCGGCGCTGGCCCCGGCGGTGGCGCTGC
GCCTCATGGACCGGATGCGGACGCCGGCGGAGGCGCTGACGAAGCGGGAGCTGGAGGTGCTCCAGCTGGTGGCGGACGGT
TTGTCGAACCAGCAGATCTCCAAGCAGCTCTTCCTCAGCCAGGCCACGGTCAAGTCCCACCTGGTGCACGTCTACGCGAA
GCTGGGCGTCGAATCCCGCACGGCGGCCGTCGCGGCGGCCGCCACCCGCCGCCTGATCCGCACCCCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)

Bacterial regulatory proteins, luxR family (GerE)

(145-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.095

100

0.383