Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B1K54_RS28600 Genome accession   NZ_CP019798
Coordinates   6404763..6405425 (+) Length   220 a.a.
NCBI ID   WP_030847852.1    Uniprot ID   A0ABX3FYL9
Organism   Streptomyces sp. fd1-xmd     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6399763..6410425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS28590 (B1K54_28575) - 6401149..6403437 (-) 2289 WP_078096376.1 MMPL family transporter -
  B1K54_RS28595 (B1K54_28580) - 6403616..6404788 (+) 1173 WP_030847849.1 sensor histidine kinase -
  B1K54_RS28600 (B1K54_28585) vraR 6404763..6405425 (+) 663 WP_030847852.1 response regulator Regulator
  B1K54_RS28610 (B1K54_28590) mgt 6405774..6407011 (+) 1238 Protein_5654 macrolide-inactivating glycosyltransferase -
  B1K54_RS37710 (B1K54_28595) - 6407033..6407599 (+) 567 WP_060179798.1 DUF1697 domain-containing protein -
  B1K54_RS28620 (B1K54_28600) - 6407614..6407988 (-) 375 Protein_5656 DUF4440 domain-containing protein -
  B1K54_RS28625 (B1K54_28605) - 6408074..6409075 (+) 1002 WP_078095363.1 ketopantoate reductase family protein -
  B1K54_RS28630 (B1K54_28610) - 6409086..6409841 (-) 756 WP_078095364.1 sirohydrochlorin chelatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23478.30 Da        Isoelectric Point: 5.8304

>NTDB_id=182059 B1K54_RS28600 WP_030847852.1 6404763..6405425(+) (vraR) [Streptomyces sp. fd1-xmd]
MSIRVLVADDQTIIRTGLRIMLNAQPGIEVVGEAADGREAVRLARELRPDVCLFDIRMPVLDGLEATRLVAGPGVPDPLA
VVVITTFDLDEYVYGALRAGARGFLLKDTGPDLLAQAVRSASGGEALIAPSVTVRLLQAFADLPAGRPVTQPVSPVTARE
EQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYETRRILPGT

Nucleotide


Download         Length: 663 bp        

>NTDB_id=182059 B1K54_RS28600 WP_030847852.1 6404763..6405425(+) (vraR) [Streptomyces sp. fd1-xmd]
GTGTCCATTCGCGTCCTCGTCGCTGACGACCAGACGATCATCCGCACCGGGTTGCGGATCATGCTGAACGCCCAGCCCGG
CATCGAGGTGGTCGGCGAGGCCGCCGACGGGCGGGAGGCGGTACGTCTGGCCCGTGAACTACGCCCCGACGTCTGCCTGT
TCGACATCCGCATGCCCGTACTCGACGGACTGGAGGCCACCCGGCTGGTCGCCGGGCCGGGCGTCCCCGACCCGCTGGCC
GTGGTCGTCATCACCACGTTCGACCTCGACGAGTACGTCTACGGCGCGCTGCGTGCCGGCGCCCGCGGATTCCTCCTCAA
GGACACGGGACCGGACCTTCTGGCGCAGGCCGTACGGTCGGCGTCCGGGGGTGAGGCGCTCATAGCGCCCAGCGTCACCG
TCCGCCTGCTCCAGGCATTCGCGGACCTGCCCGCCGGCCGGCCCGTGACCCAGCCGGTCTCCCCCGTCACCGCCCGCGAG
GAGCAGGTCCTCCTCGCCGTCGCCCGCGGGCTGACCAACACCGAGATCGCCGATGCACTGCACATCAGCCTCAGCACGGT
GAAGACGCATCTGGCCAGCCTGATGGCGAAACTCGGCGCCCGCAACCGGGTCGAGATCGCGATGTGGGCCTACGAAACGC
GCCGTATCCTCCCCGGAACCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

98.182

0.368

Multiple sequence alignment