Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   B1K54_RS26730 Genome accession   NZ_CP019798
Coordinates   5896818..5897612 (-) Length   264 a.a.
NCBI ID   WP_030838117.1    Uniprot ID   A0ABZ1Q8F5
Organism   Streptomyces sp. fd1-xmd     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5891818..5902612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS26715 (B1K54_26685) - 5892059..5892766 (+) 708 WP_078095203.1 GNAT family N-acetyltransferase -
  B1K54_RS26720 (B1K54_26690) - 5892864..5894720 (+) 1857 WP_060177920.1 IucA/IucC family protein -
  B1K54_RS26725 (B1K54_26695) - 5894775..5896745 (+) 1971 WP_030838113.1 ATP-dependent DNA helicase -
  B1K54_RS26730 (B1K54_26700) dinR/lexA 5896818..5897612 (-) 795 WP_030838117.1 transcriptional repressor LexA Regulator
  B1K54_RS26735 (B1K54_26705) nrdR 5898082..5898594 (+) 513 WP_030838121.1 transcriptional regulator NrdR -
  B1K54_RS26740 (B1K54_26710) - 5898740..5901631 (+) 2892 WP_030838124.1 vitamin B12-dependent ribonucleotide reductase -
  B1K54_RS26745 (B1K54_26715) - 5901916..5902521 (+) 606 WP_030650343.1 YdbC family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28545.31 Da        Isoelectric Point: 7.4238

>NTDB_id=182054 B1K54_RS26730 WP_030838117.1 5896818..5897612(-) (dinR/lexA) [Streptomyces sp. fd1-xmd]
MTTTADSAAITAQNRSQNRLEPVHAMNDANLNPDADAAVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=182054 B1K54_RS26730 WP_030838117.1 5896818..5897612(-) (dinR/lexA) [Streptomyces sp. fd1-xmd]
GTGACCACCACCGCAGACAGTGCCGCCATCACTGCCCAGAACCGCTCCCAGAACCGACTCGAGCCGGTGCATGCCATGAA
CGACGCAAACCTGAACCCGGACGCGGACGCCGCAGTGCGCCCCGCACGCTCGCTGCCAGGTCGACCTCCAGGCATCCGCG
CGGACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGCGACTCCGTGCAGCGCAGGGGTTACCCG
CCGTCGATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACGTCGTCGGTGGCACACCAGCTGATGGCGCTGGAGCG
CAAGGGCTTCCTGCGTCGCGACCCGCACCGGCCCCGGGCCTACGAGGTGCGCGGCTCGGACCAGCCCAGCTCGCAGCCCA
CGGACACCACCGGCAAGCCCGCCGCCTCCTACGTTCCCCTCGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAG
GAGTCGGTCGAGGACGTGTTCCCGCTGCCCCGCCAGCTCGTCGGCGACGGTGAGCTCTTCGTCCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCCGCCATTTGCGACGGCGACTGGGTCACGGTCCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCG
TCGCCGCGATGCTGGACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAAC
GCCGCCTACCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTCCTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375