Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   B1K54_RS18665 Genome accession   NZ_CP019798
Coordinates   4159002..4160141 (+) Length   379 a.a.
NCBI ID   WP_060177151.1    Uniprot ID   A0ABX3G5F3
Organism   Streptomyces sp. fd1-xmd     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4154002..4165141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS38340 dnaA 4154032..4154551 (+) 520 Protein_3679 chromosomal replication initiator protein DnaA -
  B1K54_RS38345 dnaA 4154686..4155798 (+) 1113 Protein_3680 chromosomal replication initiator protein DnaA -
  B1K54_RS18655 (B1K54_18625) dnaN 4156675..4157805 (+) 1131 WP_030839288.1 DNA polymerase III subunit beta -
  B1K54_RS18660 (B1K54_18630) gnd 4158051..4158926 (+) 876 WP_030839285.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  B1K54_RS18665 (B1K54_18635) recF 4159002..4160141 (+) 1140 WP_060177151.1 DNA replication/repair protein RecF Machinery gene
  B1K54_RS18670 (B1K54_18640) - 4160138..4160674 (+) 537 WP_030839279.1 DUF721 domain-containing protein -
  B1K54_RS18675 (B1K54_18645) gyrB 4160980..4163001 (+) 2022 WP_030839278.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40946.62 Da        Isoelectric Point: 7.5163

>NTDB_id=182025 B1K54_RS18665 WP_060177151.1 4159002..4160141(+) (recF) [Streptomyces sp. fd1-xmd]
MHVSHLSLADFRSYARAEVSLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGADRAVIRAAVTQGERR
QLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRQGADLSTLDVWDQHLARAGAELLAQRLDLIATLLPLADKAYEQLAPGGGPLGLAYRCSAGEPV
DSGAARTREALYEALLAALGEVRKQEIERGVTLVGPHRDDVLLRLGELPAKGYASHGESWSYALALRLASYELLRSEGSE
PVLILDDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLVGARFGVSGGEVTRL

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=182025 B1K54_RS18665 WP_060177151.1 4159002..4160141(+) (recF) [Streptomyces sp. fd1-xmd]
ATGCATGTCTCGCATCTCTCACTGGCCGACTTCCGCTCGTACGCCCGGGCCGAGGTTTCCCTCGACCCGGGCGTCACCGC
TTTCGTGGGTCCCAACGGCCAGGGCAAGACCAACCTCGTCGAGGCGGTCGGCTACCTGGCGACCCTGGGCAGCCACCGGG
TCTCCTCGGACGCCCCGCTCGTACGGATGGGCGCGGACCGGGCGGTCATCCGCGCGGCCGTCACCCAGGGCGAGCGCCGG
CAGCTGGTCGAGCTGGAGCTGAACCCCGGCCGCGCCAACCGCGCCCGCATCAACCGGTCCTCGCAGGTCAGGCCCCGGGA
CGTGCTGGGGATCGTACGGACGGTGCTGTTCGCGCCGGAGGACCTGGCCCTGGTCAAGGGCGACCCGGGCGAGCGGCGCC
GCTTCCTGGACGAGCTGGTCACCGCCCGCTCGCCGCGGATGGCCGGGGTCCGCTCCGACTACGAGCGCGTCCTCAAGCAG
CGCAACACCCTGCTGAAGTCCGCGGCGATGGCCCGTCGGCACGGCGGCCGCCAAGGGGCGGACCTGTCCACGCTCGACGT
GTGGGACCAGCACCTCGCGCGCGCGGGCGCCGAGCTGCTGGCGCAGCGCCTGGACCTGATCGCGACGCTGCTGCCGCTGG
CGGACAAGGCGTACGAGCAGCTCGCGCCCGGCGGTGGCCCGCTGGGGCTGGCGTACAGGTGCTCGGCGGGCGAGCCGGTG
GACAGCGGGGCGGCACGTACCCGCGAGGCCCTGTACGAGGCGCTGCTGGCGGCGCTCGGCGAGGTGCGCAAGCAGGAGAT
CGAGCGCGGGGTGACCCTGGTCGGCCCGCACCGCGACGACGTGCTGCTGCGGCTGGGGGAGCTCCCCGCCAAGGGCTACG
CCAGCCACGGCGAGTCCTGGTCGTACGCGCTGGCGCTGCGGCTGGCCTCCTACGAGCTGCTGCGCTCGGAAGGCAGCGAG
CCGGTGCTGATCCTGGACGACGTCTTCGCGGAACTGGACGCGCGGCGCCGGGAGCGGCTGGCGGAGCTGGTGGCGCCGGG
CGAGCAGGTCCTGGTGACGGCGGCCGTGGACGACGACGTCCCCGGCGTGCTGGTGGGAGCGCGGTTCGGGGTGTCCGGCG
GTGAGGTGACCCGGTTGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.162

94.723

0.361

Multiple sequence alignment