Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   STRMOE7_RS16795 Genome accession   NZ_CP019779
Coordinates   3808156..3809157 (-) Length   333 a.a.
NCBI ID   WP_084771711.1    Uniprot ID   -
Organism   Streptomyces sp. MOE7     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3803156..3814157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRMOE7_RS16780 (STRMOE7_16750) - 3803892..3805982 (-) 2091 WP_084771708.1 fructose-specific PTS transporter subunit EIIC -
  STRMOE7_RS16785 (STRMOE7_16755) pfkB 3806106..3807053 (-) 948 WP_084771709.1 1-phosphofructokinase -
  STRMOE7_RS16790 (STRMOE7_16760) - 3807050..3807829 (-) 780 WP_084771710.1 DeoR/GlpR family DNA-binding transcription regulator -
  STRMOE7_RS16795 (STRMOE7_16765) rpoS 3808156..3809157 (-) 1002 WP_084771711.1 sigma-70 family RNA polymerase sigma factor Regulator
  STRMOE7_RS16800 (STRMOE7_16770) - 3809382..3809954 (+) 573 WP_084771712.1 GNAT family N-acetyltransferase -
  STRMOE7_RS16805 (STRMOE7_16775) - 3810047..3810577 (+) 531 WP_084771713.1 hypothetical protein -
  STRMOE7_RS16810 (STRMOE7_16780) - 3810761..3811809 (+) 1049 Protein_3359 questin oxidase family protein -
  STRMOE7_RS16815 (STRMOE7_16785) - 3811860..3812627 (-) 768 WP_084776207.1 class III extradiol ring-cleavage dioxygenase -
  STRMOE7_RS16820 (STRMOE7_16790) - 3812794..3813291 (+) 498 WP_033271149.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36912.32 Da        Isoelectric Point: 4.7685

>NTDB_id=181948 STRMOE7_RS16795 WP_084771711.1 3808156..3809157(-) (rpoS) [Streptomyces sp. MOE7]
MATRAVARRQESTTASDGGHSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYAQQILDGEVTDGNAA
GAAREELEALTEEGAKAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPEEVAGELGSTPARVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAASPEQSVLTLLRSEELEDLIDRLDHRTASIIKARYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLEL
KRMAHDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=181948 STRMOE7_RS16795 WP_084771711.1 3808156..3809157(-) (rpoS) [Streptomyces sp. MOE7]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGGAGAGCACCACCGCTTCCGACGGGGGCCACAGTGTTCGCGCCGTAGGCGG
GGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCTCTGCTCGACGCCGCCAAGGAGG
TCGAGCTGTCCCAGACCATCGAGGCCGGTGTCTACGCCCAGCAGATCCTCGACGGTGAGGTCACCGACGGCAATGCCGCC
GGTGCCGCCCGTGAGGAGCTGGAGGCGCTGACCGAGGAGGGGGCCAAGGCCAAGGACGTCTTCATCCGCTCCAACCTCCG
GCTGGTCGTCGCCGTGGCGCGCCGCTACCCGCGTGCCGGGCTGCCCCTGCTGGACCTGATCCAGGAGGGCAACGCCGGCC
TGGTCCGCGCCGTGGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCGACGTGGTGGATCCGCCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCGCGCACGATCCGGCTGCCCGTGCACCTCGTCGAGGAGCTGGGGCGGATCCGCCG
GGTGCAGCGCGAGTTCAACCGCGAGAACGGCCGCGACCCGGAGCCCGAGGAGGTCGCCGGCGAGCTGGGCTCCACGCCCG
CCCGTGTCACCGACGTGCTGGACTGGGCGCGCGACCCGGTCAGCCTCAACATGTCGGTGGACGACGACGGCGACACCCAG
TTCGGTGACCTGCTGGAGGACACCTCCGCCGCCTCCCCCGAGCAGTCGGTGCTCACGCTGCTGCGCAGCGAGGAGCTGGA
GGACCTGATCGACCGCCTCGACCACCGCACGGCCTCGATCATCAAGGCCCGCTACGGCATCGAGGACGGCCGCGAGCGCA
CGCTGACCGAGGTCGGCAAGCAGCACGGCCTGACCCGCGAGCGGATCCGGCAGATAGAGAAGCACGCGCTGCTGGAGCTG
AAGCGGATGGCGCACGACACGGGCTTCGACGCGGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(270-321)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70 region 2 (Sigma70_r2)

(101-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.199

90.39

0.363