Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A7983_RS10680 Genome accession   NZ_CP015750
Coordinates   2354865..2356247 (-) Length   460 a.a.
NCBI ID   WP_005971086.1    Uniprot ID   A0A1V2R930
Organism   Pectobacterium wasabiae CFBP 3304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2349865..2361247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7983_RS10650 (A7983_10650) pepP 2350114..2351439 (-) 1326 WP_005971096.1 Xaa-Pro aminopeptidase -
  A7983_RS10655 (A7983_10655) - 2351501..2352088 (-) 588 WP_005971094.1 YecA family protein -
  A7983_RS10660 (A7983_10660) zapA 2352281..2352610 (+) 330 WP_005971092.1 cell division protein ZapA -
  A7983_RS10670 (A7983_10670) - 2352909..2353550 (+) 642 WP_005971090.1 5-formyltetrahydrofolate cyclo-ligase -
  A7983_RS10675 (A7983_10675) nadR 2353547..2354800 (-) 1254 WP_005971088.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  A7983_RS10680 (A7983_10680) radA 2354865..2356247 (-) 1383 WP_005971086.1 DNA repair protein RadA Machinery gene
  A7983_RS10685 (A7983_10685) serB 2356265..2357242 (-) 978 WP_005971084.1 phosphoserine phosphatase -
  A7983_RS10690 (A7983_10690) - 2357399..2358091 (+) 693 WP_005971081.1 YtjB family periplasmic protein -
  A7983_RS10695 (A7983_10695) prfC 2358301..2359890 (+) 1590 WP_005971078.1 peptide chain release factor 3 -
  A7983_RS10700 (A7983_10700) osmY 2360414..2361022 (+) 609 WP_005971075.1 molecular chaperone OsmY -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49576.13 Da        Isoelectric Point: 7.4218

>NTDB_id=181935 A7983_RS10680 WP_005971086.1 2354865..2356247(-) (radA) [Pectobacterium wasabiae CFBP 3304]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=181935 A7983_RS10680 WP_005971086.1 2354865..2356247(-) (radA) [Pectobacterium wasabiae CFBP 3304]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGATTACCCGCGCTGGCAGGGGCAGTGCAGCGC
CTGCCACGCCTGGAATACCATTACTGAAGTTCGCCTTGCGTCGGCATCCGTATCACGCTCCGACCGCCTCACCGGCTATG
CGGGTGAGAGTGCTGGCGTCAGTCGAGTGCAAAAGCTCTCGGAAATCAGCCTCGAAGCCCTGCCTCGTTTTTCTACCGGC
TTTCAGGAGTTTGACCGCGTTTTGGGCGGTGGCGTCGTTCCGGGCAGCGCGATCCTGATCGGCGGCAACCCCGGCGCAGG
TAAAAGTACCCTGCTACTGCAAACGCTCTGCAAGCTGTCAGAAAATATGAAAACCCTGTACGTCACCGGGGAAGAATCCT
TGCAACAGGTGGCGATGCGGGCACACCGTCTTAATCTGCCGACCCAGAATCTCAACATGCTGTCGGAAACCAGTATTGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAACCGAAGCTGATGGTGATCGACTCCATTCAGGTGATGCATCTTGCTGACAT
TCAGTCGTCCCCCGGCAGCGTTGCACAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTCG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCACTCGCTGGGCCGAAAGTCTTGGAACACTGCATCGATTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCACGCTTCCGCACGCTGCGCAGCCATAAAAACCGTTTCGGGGCCGTCAATGAATT
GGGAGTGTTCGCCATGACGGAACAAGGGCTGCGTGAGATCAGCAATCCATCGGCCATTTTCCTCAGTCGCGGGGATGAAG
TGACGTCCGGTAGTTCGGTCATGGTAGTGTGGGAAGGCACGCGCCCGCTGTTGGTCGAGATTCAGGCACTGGTGGATCAA
TCAATGATGGCCAACCCGCGTCGCGTTGCGGTCGGGCTGGAGCAAAACCGATTAGCGATCCTACTGGCGGTACTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAAGATGTGTTCGTGAATGTCGTCGGCGGCGTCAAAGTCACCGAAACCAGCGCCG
ATCTGGCGCTGCTGCTATCGCTGGTTTCCAGCTTCCGCGACCGCCCGCTGCCGCAGGATCTGGTCATCTTCGGTGAAGTC
GGCCTAGCGGGCGAAATACGCCCGGTTCCCAGCGGACAAGAGAGAATTACCGAAGCCGCCAAGCACGGCTTTAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCAGCCAGCATGCAAGTGTTCGGCGTGAAAAAGCTGGCCGATGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2R930

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426

Multiple sequence alignment