Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B0915_RS25715 Genome accession   NZ_CP019778
Coordinates   5010351..5010827 (+) Length   158 a.a.
NCBI ID   WP_001186786.1    Uniprot ID   -
Organism   Escherichia coli strain NCTC86     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5005351..5015827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0915_RS25685 (B0915_26225) - 5005475..5008321 (+) 2847 WP_078046158.1 Ag43/Cah family autotransporter adhesin -
  B0915_RS25690 (B0915_26230) - 5008392..5008587 (+) 196 Protein_4725 DUF905 family protein -
  B0915_RS25700 (B0915_26240) - 5008705..5009523 (+) 819 WP_078046159.1 DUF932 domain-containing protein -
  B0915_RS26995 (B0915_26245) - 5009523..5009696 (+) 174 WP_001183321.1 hypothetical protein -
  B0915_RS25710 (B0915_26250) - 5009862..5010335 (+) 474 WP_021532903.1 antirestriction protein -
  B0915_RS25715 (B0915_26255) radC 5010351..5010827 (+) 477 WP_001186786.1 RadC family protein Machinery gene
  B0915_RS25720 (B0915_26260) - 5010890..5011111 (+) 222 WP_021532904.1 DUF987 domain-containing protein -
  B0915_RS25730 (B0915_26270) - 5011274..5011642 (+) 369 WP_001540478.1 type IV toxin-antitoxin system YeeU family antitoxin -
  B0915_RS25735 (B0915_26275) - 5011732..5012106 (+) 375 WP_078046160.1 TA system toxin CbtA family protein -
  B0915_RS25740 (B0915_26280) - 5012103..5012594 (+) 492 WP_001586604.1 DUF5983 family protein -
  B0915_RS25745 (B0915_26285) - 5012611..5012787 (+) 177 WP_001586605.1 DUF957 domain-containing protein -
  B0915_RS27000 - 5012893..5013042 (+) 150 Protein_4735 hypothetical protein -
  B0915_RS27660 - 5013012..5013146 (+) 135 Protein_4736 transcriptional regulator -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17776.44 Da        Isoelectric Point: 7.6152

>NTDB_id=181920 B0915_RS25715 WP_001186786.1 5010351..5010827(+) (radC) [Escherichia coli strain NCTC86]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=181920 B0915_RS25715 WP_001186786.1 5010351..5010827(+) (radC) [Escherichia coli strain NCTC86]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACTCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392