Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B0915_RS21470 Genome accession   NZ_CP019778
Coordinates   4184251..4184919 (-) Length   222 a.a.
NCBI ID   WP_066009552.1    Uniprot ID   -
Organism   Escherichia coli strain NCTC86     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4179251..4189919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0915_RS21440 (B0915_21865) rfaQ 4179423..4180493 (-) 1071 WP_001311221.1 lipopolysaccharide core heptosyltransferase RfaQ -
  B0915_RS21445 (B0915_21870) waaA 4180900..4182177 (+) 1278 WP_000891566.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  B0915_RS21450 (B0915_21875) coaD 4182185..4182664 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  B0915_RS21455 (B0915_21880) mutM 4182703..4183512 (-) 810 WP_001114529.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  B0915_RS21460 (B0915_21885) rpmG 4183610..4183777 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  B0915_RS21465 (B0915_21890) rpmB 4183798..4184034 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  B0915_RS21470 (B0915_21895) radC 4184251..4184919 (-) 669 WP_066009552.1 DNA repair protein RadC Machinery gene
  B0915_RS21475 (B0915_21900) coaBC 4185091..4186311 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  B0915_RS21480 (B0915_21905) dut 4186289..4186747 (+) 459 WP_000976070.1 dUTP diphosphatase -
  B0915_RS21485 (B0915_21910) slmA 4186854..4187450 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  B0915_RS21490 (B0915_21915) pyrE 4187487..4188128 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  B0915_RS21495 (B0915_21920) rph 4188192..4188908 (-) 717 WP_001247093.1 ribonuclease PH -
  B0915_RS21505 (B0915_21930) yicC 4189035..4189898 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25237.36 Da        Isoelectric Point: 7.4511

>NTDB_id=181898 B0915_RS21470 WP_066009552.1 4184251..4184919(-) (radC) [Escherichia coli strain NCTC86]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMCEESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHCRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=181898 B0915_RS21470 WP_066009552.1 4184251..4184919(-) (radC) [Escherichia coli strain NCTC86]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGTGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATTGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGTTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

50.459

98.198

0.495