Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ESP131_RS13580 Genome accession   NZ_CP015731
Coordinates   2593418..2595220 (-) Length   600 a.a.
NCBI ID   WP_029342208.1    Uniprot ID   -
Organism   Exiguobacterium sp. U13-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2588418..2600220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ESP131_RS13555 (ESP131_13535) - 2589276..2590160 (-) 885 WP_029342210.1 RluA family pseudouridine synthase -
  ESP131_RS13560 (ESP131_13540) - 2590179..2590982 (-) 804 WP_023468882.1 NAD kinase -
  ESP131_RS13565 (ESP131_13545) - 2590993..2591637 (-) 645 WP_035396676.1 GTP pyrophosphokinase family protein -
  ESP131_RS13570 (ESP131_13550) - 2591755..2592315 (+) 561 WP_052169458.1 CYTH domain-containing protein -
  ESP131_RS13575 (ESP131_13555) - 2592410..2593201 (+) 792 WP_029342209.1 DsbA family protein -
  ESP131_RS13580 (ESP131_13560) pepF 2593418..2595220 (-) 1803 WP_029342208.1 oligoendopeptidase F Regulator
  ESP131_RS16565 - 2595285..2596235 (-) 951 WP_071908824.1 competence protein CoiA family protein -
  ESP131_RS13590 (ESP131_13570) cls 2596254..2597765 (-) 1512 WP_034786055.1 cardiolipin synthase -
  ESP131_RS13595 (ESP131_13575) - 2597836..2598558 (+) 723 WP_047393679.1 SDR family oxidoreductase -
  ESP131_RS13600 (ESP131_13580) mecA 2598621..2599247 (-) 627 WP_023468889.1 adaptor protein MecA -
  ESP131_RS13605 (ESP131_13585) spxA 2599419..2599817 (-) 399 WP_012370920.1 transcriptional regulator SpxA -
  ESP131_RS16810 - 2599990..2600127 (-) 138 WP_023468890.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68376.70 Da        Isoelectric Point: 4.5583

>NTDB_id=181878 ESP131_RS13580 WP_029342208.1 2593418..2595220(-) (pepF) [Exiguobacterium sp. U13-1]
MAEVLTRQDVDVTETWNLESIYATNEAWEEEFESVKAMLPLLVEYKGRLGQSAETLYEGLQLRDEVSRRLYKLYTYAHMR
YDENTADSFYQAMNDRARTLASQIGATLAFMTPELLAVPESTIETYLNENPDLAMYRHAFDELNQEREHVLTEAEEAILA
KAGEVLGQSGTTFGMLNNADLTFPKIKGEDGEETELTHGRFITFLESSDRSVREAAFKAMYGTYAKYTNTLASTLAGSVK
KDNFYADVRKFPSARAAALHGNAIPESVYDGLVEAVHEHLPLLHRYVALRKRVLGLDELHVYDMYTPLVSEVEMKVSYEE
AKQLMVEGLAPLGAEYKHILEEGLSERWVDVRETRGKRSGAYSSGAYDTQPFILMNWQDNINNLFTLAHEFGHSVHSYYT
RKSQPYPYGDYSIFVAEVASTTNEALLNDYLLKKVTDRKEKLYLLNNQLETFRGTLFRQTMFAEFEHAIHDAARLGQSLT
PEFLTSTYYALNQKYFGEEIVLDEEIGLEWARIPHFYYNYYVYQYATGISAAAALTDQILEEGQPAVERYINNFLKAGSS
DYPIEVLKAAGVDMTTKAPVEAALRQFERVLDEFESLLAE

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=181878 ESP131_RS13580 WP_029342208.1 2593418..2595220(-) (pepF) [Exiguobacterium sp. U13-1]
ATGGCAGAAGTATTAACACGTCAAGATGTTGACGTTACAGAAACATGGAATCTAGAGTCGATTTACGCAACGAACGAAGC
GTGGGAAGAAGAATTCGAATCGGTGAAAGCGATGCTTCCATTACTCGTCGAGTATAAGGGTCGTCTTGGACAGAGTGCAG
AAACGCTCTATGAAGGGTTACAGTTACGAGACGAAGTCTCAAGACGCCTTTATAAGCTTTATACATACGCGCACATGCGT
TATGACGAAAATACAGCAGACAGCTTCTATCAAGCCATGAACGACCGTGCTCGGACGCTCGCGTCGCAAATCGGAGCAAC
ACTTGCTTTCATGACACCAGAACTATTAGCTGTACCTGAGTCAACGATTGAGACGTATCTTAATGAGAATCCAGATCTTG
CGATGTATCGTCACGCATTTGATGAATTGAATCAAGAGCGTGAACACGTCCTGACGGAAGCAGAAGAAGCGATTCTTGCG
AAGGCAGGAGAAGTACTCGGTCAATCCGGTACGACGTTCGGTATGTTGAACAATGCAGATCTGACATTCCCGAAAATTAA
AGGGGAAGACGGAGAAGAGACAGAGTTGACGCATGGTCGCTTCATCACATTCCTTGAATCATCTGATCGTTCGGTCCGTG
AAGCAGCATTTAAAGCGATGTACGGAACATATGCGAAATACACCAATACACTCGCCTCGACACTTGCTGGGTCAGTTAAG
AAAGACAACTTCTATGCGGATGTCCGGAAGTTCCCATCGGCACGCGCAGCAGCTTTACACGGTAATGCGATTCCTGAGTC
CGTCTATGATGGATTAGTTGAAGCGGTACATGAGCATTTACCACTGCTCCATCGTTACGTCGCCCTGCGTAAGCGGGTGC
TCGGACTCGATGAACTACACGTGTATGATATGTACACACCACTCGTTTCTGAGGTGGAGATGAAAGTCTCTTACGAGGAA
GCGAAACAATTGATGGTTGAAGGACTCGCACCGCTCGGAGCGGAGTACAAGCACATCCTCGAAGAAGGATTGTCTGAACG
TTGGGTTGATGTCCGGGAGACGCGTGGTAAACGGAGTGGAGCTTACTCTTCTGGTGCTTATGATACACAGCCGTTCATTT
TGATGAACTGGCAAGACAACATCAACAACCTCTTTACACTCGCACATGAATTCGGACATTCTGTCCATAGTTATTACACG
CGGAAATCTCAACCATATCCATATGGTGACTATTCAATCTTCGTCGCAGAAGTCGCCTCAACGACGAATGAAGCATTATT
GAACGACTATCTATTGAAAAAAGTGACGGATCGTAAAGAAAAACTCTATCTATTGAACAATCAACTCGAAACATTCCGCG
GAACATTGTTCCGACAAACGATGTTCGCCGAGTTCGAACATGCAATCCATGATGCGGCTCGTCTTGGACAATCGCTGACA
CCGGAATTCCTAACGTCAACGTATTATGCGTTGAATCAAAAATACTTTGGAGAAGAAATTGTATTAGATGAAGAAATTGG
TCTAGAATGGGCTCGGATTCCACACTTCTACTACAATTATTATGTCTATCAGTATGCAACAGGTATTTCTGCTGCTGCTG
CCTTGACGGATCAGATTCTAGAAGAAGGACAACCTGCTGTAGAGCGATACATCAACAATTTCTTAAAAGCGGGATCAAGT
GATTATCCAATCGAAGTGTTAAAAGCTGCGGGTGTTGATATGACAACAAAAGCACCAGTGGAAGCAGCACTTCGTCAATT
TGAACGTGTCCTAGATGAATTTGAATCTTTGTTAGCAGAGTGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-183)

Peptidase family M3 (Peptidase_M3)

(204-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.658

97.333

0.483

Multiple sequence alignment