Detailed information NTG0181877

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: B0915_RS16025
• Genome accession: NZ_CP019778
• Coordinates: 3117144..3118151 (-)
• Length: 335 a.a.
• NCBI ID: WP_066009455.1
• Uniprot ID: -
• Organism: Escherichia coli strain NCTC86
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3112144..3123151

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B0915_RS16005 (B0915_16325)	otnK	3112943..3114205 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
B0915_RS16010 (B0915_16330)	ygbL	3114202..3114840 (+)	639	WP_001278994.1	aldolase	-
B0915_RS16015 (B0915_16335)	ygbM	3114845..3115621 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
B0915_RS16020 (B0915_16340)	ygbN	3115710..3117074 (+)	1365	WP_000104441.1	GntP family transporter	-
B0915_RS16025 (B0915_16345)	rpoS	3117144..3118151 (-)	1008	WP_066009455.1	RNA polymerase sigma factor RpoS	Regulator
B0915_RS16030 (B0915_16350)	nlpD	3118214..3119308 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
B0915_RS16035 (B0915_16355)	pcm	3119493..3120119 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
B0915_RS16040 (B0915_16360)	surE	3120113..3120874 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
B0915_RS16045 (B0915_16365)	truD	3120855..3121904 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
B0915_RS16050 (B0915_16370)	ispF	3121901..3122380 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
B0915_RS16055 (B0915_16375)	ispD	3122380..3123090 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38460.46 Da
• Isoelectric Point: 4.6293

>NTDB_id=181877 B0915_RS16025 WP_066009455.1 3117144..3118151(-) (rpoS) [Escherichia coli strain NCTC86]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRSICQKG

Nucleotide

• Length: 1008 bp

>NTDB_id=181877 B0915_RS16025 WP_066009455.1 3117144..3118151(-) (rpoS) [Escherichia coli strain NCTC86]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCAGCATCTGTCAGAAAGGCTAG

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	96.418	0.704