Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ESP131_RS07185 Genome accession   NZ_CP015731
Coordinates   1411896..1413602 (+) Length   568 a.a.
NCBI ID   WP_029341101.1    Uniprot ID   -
Organism   Exiguobacterium sp. U13-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1406896..1418602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ESP131_RS07160 (ESP131_07145) xseB 1407376..1407597 (+) 222 WP_023467583.1 exodeoxyribonuclease VII small subunit -
  ESP131_RS07165 (ESP131_07150) - 1407594..1408463 (+) 870 WP_029341097.1 polyprenyl synthetase family protein -
  ESP131_RS07170 (ESP131_07155) dxs 1408581..1410467 (+) 1887 WP_047396476.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ESP131_RS07175 (ESP131_07160) - 1410470..1411279 (+) 810 WP_156772524.1 TlyA family RNA methyltransferase -
  ESP131_RS07180 (ESP131_07165) argR 1411434..1411883 (+) 450 WP_023467586.1 transcriptional regulator ArgR -
  ESP131_RS07185 (ESP131_07170) recN 1411896..1413602 (+) 1707 WP_029341101.1 DNA repair protein RecN Machinery gene
  ESP131_RS07190 (ESP131_07175) spo0A 1413606..1414328 (+) 723 WP_035398295.1 sporulation transcription factor Spo0A -
  ESP131_RS07195 (ESP131_07180) - 1414365..1414943 (-) 579 WP_029341106.1 dihydrofolate reductase family protein -
  ESP131_RS07200 (ESP131_07185) - 1415619..1415873 (-) 255 WP_023467590.1 DUF2627 family protein -
  ESP131_RS07205 (ESP131_07190) - 1415996..1417651 (+) 1656 WP_029341107.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64090.63 Da        Isoelectric Point: 4.6196

>NTDB_id=181872 ESP131_RS07185 WP_029341101.1 1411896..1413602(+) (recN) [Exiguobacterium sp. U13-1]
MLAELSIKQFAIIDELQIDFKKGMTVLTGETGAGKSIVLDAIGLLIGGRGSAEFVRYGEDRAELEGLFLIEDDHLVYGLA
EEYGIDIEDGLIILRRDLFATGKSVCRVNNKLVTLTILREFGRVLVDMHGQHEHQHLMDSTYHQAILDDFAQETIAPLLQ
AYQSGYQAYEEKRTALQSLAQSEQELAQRIDLLSFQTEEIEGAKLRAHEEDELLVERNRLANFEKLYASLKTAYDALHDE
MRGIDSVGDAMRELQQASSIDEQFSQQSDAIASAFYGLEEVGYAIRDQLETLEFDSNRLDEIEQRLSVFQQLKRKYGATI
EEVIAYGEKIRVELDTMTNRDERIERLKAEVEQLEGELFDIGGRLSQQRRKAAVQLSEAIHLELRELYMEKARFEIRFLQ
DGKTPMLRKNGIDQVEFFIMTNAGEPFKSLGKVASGGELSRIMLGLKSIFSRSVGVASIIFDEVDTGVSGRVAQAMAEKI
YRLSVDGQVLCITHLPQVASMADQHLYIRKIEETDRTTTQVNVLSQSDRGNELGRMISGAHMTDLTLRHAEELMDQAKTM
KESLKNGV

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=181872 ESP131_RS07185 WP_029341101.1 1411896..1413602(+) (recN) [Exiguobacterium sp. U13-1]
ATGCTAGCTGAATTATCGATCAAACAATTTGCGATCATTGACGAGCTACAGATCGACTTTAAAAAAGGAATGACCGTCTT
GACTGGGGAAACAGGTGCCGGTAAATCGATCGTTCTCGACGCGATCGGTTTATTGATTGGTGGACGTGGATCCGCGGAAT
TCGTTCGATACGGGGAAGATCGGGCGGAACTAGAAGGATTGTTTCTGATTGAAGACGACCATCTCGTCTATGGTCTTGCA
GAAGAGTATGGTATCGATATCGAAGATGGATTGATCATCTTACGACGTGATCTGTTCGCGACCGGGAAAAGTGTCTGTCG
CGTCAACAATAAGCTGGTCACACTGACGATCTTACGTGAGTTCGGGCGTGTCCTCGTCGACATGCACGGGCAACATGAAC
ATCAGCATTTAATGGACAGTACGTATCATCAAGCGATTCTCGATGACTTCGCGCAAGAGACGATTGCGCCGCTCCTTCAA
GCCTATCAATCCGGTTATCAAGCGTATGAAGAAAAACGGACGGCGCTGCAATCGCTCGCGCAAAGTGAGCAAGAACTCGC
TCAACGGATCGATCTACTATCGTTTCAGACAGAAGAGATTGAAGGCGCAAAACTTCGAGCACATGAGGAAGATGAGTTGC
TCGTCGAACGAAATCGTCTCGCGAATTTCGAGAAGTTATATGCATCGTTAAAGACAGCGTATGATGCTTTGCATGATGAG
ATGCGCGGCATCGACTCTGTTGGAGACGCGATGCGTGAATTACAGCAAGCATCAAGCATCGATGAACAGTTTTCGCAGCA
GAGTGACGCGATCGCAAGCGCTTTTTATGGACTTGAAGAAGTCGGATATGCGATTCGAGATCAACTCGAAACACTTGAGT
TTGATTCCAATCGACTCGATGAGATCGAACAACGTCTATCGGTCTTTCAACAGCTGAAACGAAAATACGGGGCGACAATC
GAGGAAGTCATCGCGTATGGGGAGAAGATTCGAGTTGAACTCGATACGATGACGAATCGAGATGAACGGATTGAACGATT
AAAAGCTGAAGTCGAACAGCTCGAAGGCGAATTGTTTGATATAGGTGGTCGACTCTCGCAACAGCGTCGAAAAGCGGCAG
TTCAATTAAGCGAAGCGATTCATCTGGAATTGCGTGAGCTCTACATGGAGAAAGCACGGTTTGAAATTCGTTTTCTTCAA
GACGGGAAGACACCGATGCTACGCAAGAACGGGATCGACCAAGTCGAGTTCTTCATCATGACGAATGCGGGAGAGCCATT
CAAGTCGCTCGGAAAAGTCGCATCGGGCGGGGAGTTATCTCGTATCATGCTCGGATTGAAGTCAATCTTCTCGCGCTCGG
TTGGAGTCGCTTCGATCATTTTCGATGAAGTCGATACAGGAGTATCGGGTCGTGTCGCACAAGCGATGGCTGAAAAAATC
TATCGTTTGTCAGTAGACGGACAAGTACTCTGTATTACGCACTTACCGCAAGTCGCTTCGATGGCTGATCAACATCTCTA
TATTCGGAAGATTGAAGAGACGGATCGTACGACGACACAGGTCAATGTCTTGTCTCAGTCAGACCGAGGAAACGAACTTG
GACGGATGATTTCCGGTGCACATATGACGGATTTGACGTTACGCCATGCCGAGGAATTGATGGATCAGGCGAAGACGATG
AAAGAATCGCTTAAAAATGGGGTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.229

100

0.537

Multiple sequence alignment