Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B0915_RS12340 Genome accession   NZ_CP019778
Coordinates   2362911..2363387 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain NCTC86     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2357911..2368387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0915_RS12295 (B0915_12555) - 2358338..2358551 (+) 214 Protein_2270 DUF905 family protein -
  B0915_RS12305 (B0915_12565) - 2358651..2359391 (+) 741 Protein_2271 DUF932 domain-containing protein -
  B0915_RS12310 (B0915_12570) - 2359423..2360994 (-) 1572 WP_000381395.1 IS66-like element ISCro1 family transposase -
  B0915_RS12315 (B0915_12575) tnpB 2361014..2361361 (-) 348 WP_078046020.1 IS66 family insertion sequence element accessory protein TnpB -
  B0915_RS12320 (B0915_12580) tnpA 2361361..2362038 (-) 678 WP_001339397.1 IS66-like element accessory protein TnpA -
  B0915_RS12335 (B0915_12590) - 2362422..2362895 (+) 474 WP_000855059.1 antirestriction protein -
  B0915_RS12340 (B0915_12595) radC 2362911..2363387 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  B0915_RS12345 (B0915_12600) - 2363450..2363671 (+) 222 WP_023356553.1 DUF987 domain-containing protein -
  B0915_RS12355 (B0915_12610) - 2363834..2364202 (+) 369 WP_001360327.1 type IV toxin-antitoxin system YeeU family antitoxin -
  B0915_RS12360 (B0915_12615) - 2364292..2364666 (+) 375 WP_000854765.1 TA system toxin CbtA family protein -
  B0915_RS12365 (B0915_12620) - 2364663..2364815 (+) 153 Protein_2280 DUF5983 family protein -
  B0915_RS26575 (B0915_12625) - 2364915..2364995 (+) 81 Protein_2281 hypothetical protein -
  B0915_RS12370 (B0915_12630) istB 2365259..2366005 (-) 747 Protein_2282 IS21-like element ISEc12 family helper ATPase IstB -
  B0915_RS12375 (B0915_12635) istA 2366020..2367561 (-) 1542 WP_001445980.1 IS21-like element ISEc12 family transposase -
  B0915_RS27310 - 2367755..2368253 (+) 499 Protein_2284 transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=181863 B0915_RS12340 WP_001186774.1 2362911..2363387(+) (radC) [Escherichia coli strain NCTC86]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=181863 B0915_RS12340 WP_001186774.1 2362911..2363387(+) (radC) [Escherichia coli strain NCTC86]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399