Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DA68_RS23370 Genome accession   NZ_CP015727
Coordinates   4691291..4692418 (+) Length   375 a.a.
NCBI ID   WP_000470740.1    Uniprot ID   -
Organism   Bacillus cereus strain A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4686291..4697418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA68_RS23340 (DA68_23340) spoIIIJ 4686330..4687097 (-) 768 WP_000727740.1 YidC family membrane integrase SpoIIIJ -
  DA68_RS23345 (DA68_23345) rnpA 4687150..4687497 (-) 348 WP_000726622.1 ribonuclease P protein component -
  DA68_RS23350 (DA68_23350) rpmH 4687574..4687708 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  DA68_RS23355 (DA68_23355) dnaA 4688273..4689613 (+) 1341 WP_000428017.1 chromosomal replication initiator protein DnaA -
  DA68_RS23360 (DA68_23360) dnaN 4689793..4690938 (+) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  DA68_RS23365 (DA68_23365) yaaA 4691066..4691278 (+) 213 WP_000821364.1 S4 domain-containing protein YaaA -
  DA68_RS23370 (DA68_23370) recF 4691291..4692418 (+) 1128 WP_000470740.1 DNA replication/repair protein RecF Machinery gene
  DA68_RS23375 (DA68_23375) gyrB 4692457..4694379 (+) 1923 WP_000435982.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  DA68_RS23380 (DA68_23380) gyrA 4694468..4696939 (+) 2472 WP_001282864.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43389.69 Da        Isoelectric Point: 6.6001

>NTDB_id=181851 DA68_RS23370 WP_000470740.1 4691291..4692418(+) (recF) [Bacillus cereus strain A1]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNNS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=181851 DA68_RS23370 WP_000470740.1 4691291..4692418(+) (recF) [Bacillus cereus strain A1]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAGGGGAAATTACAAAAAAGAAACAATTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653

Multiple sequence alignment