Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B0915_RS05670 Genome accession   NZ_CP019778
Coordinates   1105547..1106023 (+) Length   158 a.a.
NCBI ID   WP_021543704.1    Uniprot ID   -
Organism   Escherichia coli strain NCTC86     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100547..1111023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0915_RS05640 (B0915_05750) - 1100676..1103192 (+) 2517 WP_078045945.1 hypothetical protein -
  B0915_RS05645 (B0915_05755) - 1103268..1103723 (+) 456 WP_000581502.1 IrmA family protein -
  B0915_RS05650 (B0915_05760) - 1103802..1104035 (+) 234 WP_001119727.1 DUF905 family protein -
  B0915_RS05660 (B0915_05770) - 1104136..1104954 (+) 819 WP_068879456.1 DUF932 domain-containing protein -
  B0915_RS05665 (B0915_05775) - 1105046..1105531 (+) 486 WP_000214307.1 antirestriction protein -
  B0915_RS05670 (B0915_05780) radC 1105547..1106023 (+) 477 WP_021543704.1 RadC family protein Machinery gene
  B0915_RS05675 (B0915_05785) - 1106086..1106307 (+) 222 WP_000692298.1 DUF987 domain-containing protein -
  B0915_RS05680 (B0915_05790) - 1106326..1107009 (+) 684 WP_000086768.1 hypothetical protein -
  B0915_RS05685 (B0915_05795) - 1107020..1107400 (+) 381 WP_001285602.1 type IV toxin-antitoxin system YeeU family antitoxin -
  B0915_RS05690 (B0915_05800) - 1107481..1107864 (+) 384 WP_000854686.1 TA system toxin CbtA family protein -
  B0915_RS05695 (B0915_05805) - 1107861..1108349 (+) 489 WP_001054233.1 DUF5983 family protein -
  B0915_RS05700 (B0915_05810) - 1108366..1108563 (+) 198 WP_000839256.1 DUF957 domain-containing protein -
  B0915_RS05705 (B0915_05815) - 1108648..1109490 (+) 843 WP_068879455.1 DUF4942 domain-containing protein -
  B0915_RS05715 (B0915_05825) infA 1109982..1110200 (-) 219 WP_001040187.1 translation initiation factor IF-1 -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17601.26 Da        Isoelectric Point: 7.6151

>NTDB_id=181848 B0915_RS05670 WP_021543704.1 1105547..1106023(+) (radC) [Escherichia coli strain NCTC86]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHGPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=181848 B0915_RS05670 WP_021543704.1 1105547..1106023(+) (radC) [Escherichia coli strain NCTC86]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGGACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392