Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DA68_RS08450 Genome accession   NZ_CP015727
Coordinates   1646087..1646365 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain A1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1641087..1651365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA68_RS08430 (DA68_08430) - 1642772..1643581 (+) 810 WP_000664542.1 papain-like cysteine protease family protein -
  DA68_RS08435 (DA68_08435) - 1643607..1644209 (+) 603 WP_000517260.1 hypothetical protein -
  DA68_RS08440 (DA68_08440) - 1644450..1644701 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  DA68_RS08445 (DA68_08445) - 1645078..1645968 (+) 891 WP_025966193.1 helix-turn-helix domain-containing protein -
  DA68_RS08450 (DA68_08450) abrB 1646087..1646365 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DA68_RS08455 (DA68_08455) - 1646886..1648136 (+) 1251 WP_001032369.1 hypothetical protein -
  DA68_RS08460 (DA68_08460) - 1648204..1648962 (+) 759 WP_000347986.1 TSUP family transporter -
  DA68_RS08465 (DA68_08465) - 1649216..1649875 (+) 660 WP_025966192.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=181827 DA68_RS08450 WP_000842216.1 1646087..1646365(+) (abrB) [Bacillus cereus strain A1]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=181827 DA68_RS08450 WP_000842216.1 1646087..1646365(+) (abrB) [Bacillus cereus strain A1]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGAGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment