Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DA68_RS06240 Genome accession   NZ_CP015727
Coordinates   1206147..1206434 (+) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus cereus strain A1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1201147..1211434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA68_RS06220 (DA68_06220) - 1202323..1202520 (+) 198 WP_001048102.1 DUF4083 domain-containing protein -
  DA68_RS06225 (DA68_06225) - 1202552..1203013 (+) 462 WP_000024999.1 NUDIX hydrolase -
  DA68_RS06230 (DA68_06230) nadE 1203063..1203881 (-) 819 WP_000174891.1 ammonia-dependent NAD(+) synthetase -
  DA68_RS06235 (DA68_06235) - 1204151..1206031 (+) 1881 WP_025966234.1 ABC transporter permease -
  DA68_RS06240 (DA68_06240) abrB 1206147..1206434 (+) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DA68_RS06245 (DA68_06245) - 1206709..1207656 (+) 948 WP_000099756.1 serine protease -
  DA68_RS06250 (DA68_06250) - 1207696..1208004 (-) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  DA68_RS06255 (DA68_06255) - 1208111..1209046 (+) 936 WP_000874081.1 aldo/keto reductase -
  DA68_RS06260 (DA68_06260) - 1209094..1210269 (+) 1176 WP_001082486.1 MFS transporter -
  DA68_RS31355 (DA68_06265) - 1210318..1210524 (+) 207 WP_001101741.1 hypothetical protein -
  DA68_RS06270 (DA68_06270) - 1210564..1210788 (-) 225 WP_000162602.1 hypothetical protein -
  DA68_RS06275 (DA68_06275) - 1210873..1211220 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=181825 DA68_RS06240 WP_000648325.1 1206147..1206434(+) (abrB) [Bacillus cereus strain A1]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=181825 DA68_RS06240 WP_000648325.1 1206147..1206434(+) (abrB) [Bacillus cereus strain A1]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGCATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment