Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B0908_RS20850 Genome accession   NZ_CP019777
Coordinates   4041125..4041793 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli NU14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4036125..4046793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0908_RS20820 (B0908_20820) rfaQ 4036303..4037361 (-) 1059 WP_000360396.1 lipopolysaccharide core heptosyltransferase RfaQ -
  B0908_RS20825 (B0908_20825) waaA 4037774..4039051 (+) 1278 WP_000891546.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  B0908_RS20830 (B0908_20830) coaD 4039059..4039538 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  B0908_RS20835 (B0908_20835) mutM 4039577..4040386 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  B0908_RS20840 (B0908_20840) rpmG 4040484..4040651 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  B0908_RS20845 (B0908_20845) rpmB 4040672..4040908 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  B0908_RS20850 (B0908_20850) radC 4041125..4041793 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  B0908_RS20855 (B0908_20855) coaBC 4041965..4043185 (+) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  B0908_RS20860 (B0908_20860) dut 4043163..4043621 (+) 459 WP_000976066.1 dUTP diphosphatase -
  B0908_RS20865 (B0908_20865) slmA 4043728..4044324 (+) 597 WP_000818598.1 nucleoid occlusion factor SlmA -
  B0908_RS20870 (B0908_20870) pyrE 4044361..4045002 (-) 642 WP_000806174.1 orotate phosphoribosyltransferase -
  B0908_RS20875 (B0908_20875) rph 4045068..4045784 (-) 717 WP_001247093.1 ribonuclease PH -
  B0908_RS20885 (B0908_20885) yicC 4045911..4046774 (+) 864 WP_000621332.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=181808 B0908_RS20850 WP_001297375.1 4041125..4041793(-) (radC) [Escherichia coli NU14]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=181808 B0908_RS20850 WP_001297375.1 4041125..4041793(-) (radC) [Escherichia coli NU14]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GTTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496