Detailed information NTG0181787

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: B0908_RS15810
• Genome accession: NZ_CP019777
• Coordinates: 3039619..3040611 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli NU14
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3034619..3045611

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B0908_RS15790 (B0908_15790)	ygbM	3035250..3036026 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
B0908_RS15795 (B0908_15795)	ygbN	3036115..3037479 (+)	1365	WP_000104443.1	GntP family transporter	-
B0908_RS15800 (B0908_15800)	-	3037622..3038665 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
B0908_RS15805 (B0908_15805)	-	3038890..3039441 (+)	552	WP_001179442.1	flavodoxin family protein	-
B0908_RS15810 (B0908_15810)	rpoS	3039619..3040611 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
B0908_RS15815 (B0908_15815)	nlpD	3040674..3041768 (-)	1095	WP_306305124.1	murein hydrolase activator NlpD	-
B0908_RS15820 (B0908_15820)	pcm	3041953..3042579 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
B0908_RS15825 (B0908_15825)	surE	3042573..3043334 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
B0908_RS15830 (B0908_15830)	truD	3043315..3044364 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
B0908_RS15835 (B0908_15835)	ispF	3044361..3044840 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
B0908_RS15840 (B0908_15840)	ispD	3044840..3045550 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=181787 B0908_RS15810 WP_000081550.1 3039619..3040611(-) (rpoS) [Escherichia coli NU14]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=181787 B0908_RS15810 WP_000081550.1 3039619..3040611(-) (rpoS) [Escherichia coli NU14]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715