Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   B0908_RS11700 Genome accession   NZ_CP019777
Coordinates   2233487..2234914 (+) Length   475 a.a.
NCBI ID   WP_000980617.1    Uniprot ID   -
Organism   Escherichia coli NU14     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2228487..2239914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0908_RS11665 (B0908_11665) yeeW 2228672..2228866 (+) 195 WP_000988601.1 DUF5983 family protein -
  B0908_RS26330 - 2228912..2228992 (+) 81 Protein_2157 hypothetical protein -
  B0908_RS27130 (B0908_11675) - 2229481..2229663 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  B0908_RS11680 (B0908_11680) tmaR 2229764..2230093 (-) 330 WP_000450409.1 DUF496 family protein -
  B0908_RS11685 (B0908_11685) yeeA 2230265..2231323 (-) 1059 WP_001200890.1 FUSC family protein -
  B0908_RS11690 (B0908_11690) sbmC 2231521..2231994 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  B0908_RS11695 (B0908_11695) dacD 2232113..2233278 (-) 1166 Protein_2162 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  B0908_RS11700 (B0908_11700) sbcB 2233487..2234914 (+) 1428 WP_000980617.1 exodeoxyribonuclease I Machinery gene
  B0908_RS11705 (B0908_11705) plaP 2234988..2236346 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  B0908_RS26335 yoeI 2236336..2236398 (-) 63 WP_010723108.1 membrane protein YoeI -
  B0908_RS11710 (B0908_11710) yeeY 2236613..2237542 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  B0908_RS11715 (B0908_11715) yeeZ 2237588..2238412 (-) 825 WP_000754733.1 SDR family oxidoreductase -
  B0908_RS11720 (B0908_11720) yoeB 2238495..2238749 (-) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  B0908_RS11725 (B0908_11725) yefM 2238746..2238997 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  B0908_RS11730 (B0908_11730) hisL 2239280..2239330 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54541.87 Da        Isoelectric Point: 5.6114

>NTDB_id=181774 B0908_RS11700 WP_000980617.1 2233487..2234914(+) (sbcB) [Escherichia coli NU14]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=181774 B0908_RS11700 WP_000980617.1 2233487..2234914(+) (sbcB) [Escherichia coli NU14]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCAGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment