Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B0908_RS11645 Genome accession   NZ_CP019777
Coordinates   2227004..2227480 (+) Length   158 a.a.
NCBI ID   WP_001298074.1    Uniprot ID   -
Organism   Escherichia coli NU14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2222004..2232480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0908_RS11615 (B0908_11615) - 2222902..2223972 (+) 1071 WP_000102631.1 patatin-like phospholipase family protein -
  B0908_RS11620 (B0908_11620) - 2224108..2224785 (+) 678 WP_001362823.1 hypothetical protein -
  B0908_RS11625 (B0908_11625) - 2224801..2225211 (+) 411 WP_000846704.1 hypothetical protein -
  B0908_RS11635 (B0908_11635) - 2225432..2226253 (+) 822 WP_001234570.1 DUF932 domain-containing protein -
  B0908_RS11640 (B0908_11640) - 2226516..2226989 (+) 474 WP_000855071.1 antirestriction protein -
  B0908_RS11645 (B0908_11645) radC 2227004..2227480 (+) 477 WP_001298074.1 RadC family protein Machinery gene
  B0908_RS11650 (B0908_11650) yeeT 2227549..2227770 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  B0908_RS11655 (B0908_11655) cbeA 2227844..2228212 (+) 369 WP_001285586.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  B0908_RS11660 (B0908_11660) cbtA 2228301..2228675 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  B0908_RS11665 (B0908_11665) yeeW 2228672..2228866 (+) 195 WP_000988601.1 DUF5983 family protein -
  B0908_RS26330 - 2228912..2228992 (+) 81 Protein_2157 hypothetical protein -
  B0908_RS27130 (B0908_11675) - 2229481..2229663 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  B0908_RS11680 (B0908_11680) tmaR 2229764..2230093 (-) 330 WP_000450409.1 DUF496 family protein -
  B0908_RS11685 (B0908_11685) yeeA 2230265..2231323 (-) 1059 WP_001200890.1 FUSC family protein -
  B0908_RS11690 (B0908_11690) sbmC 2231521..2231994 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17670.28 Da        Isoelectric Point: 7.2519

>NTDB_id=181773 B0908_RS11645 WP_001298074.1 2227004..2227480(+) (radC) [Escherichia coli NU14]
MQQISFLPGEMTPGERSHILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=181773 B0908_RS11645 WP_001298074.1 2227004..2227480(+) (radC) [Escherichia coli NU14]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCACATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTTAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment