Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B0908_RS05725 Genome accession   NZ_CP019777
Coordinates   1139772..1140248 (+) Length   158 a.a.
NCBI ID   WP_001186727.1    Uniprot ID   -
Organism   Escherichia coli NU14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1134772..1145248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0908_RS05695 (B0908_05695) - 1134946..1137792 (+) 2847 WP_000820443.1 Ag43/Cah family autotransporter adhesin -
  B0908_RS05710 (B0908_05710) - 1138123..1138944 (+) 822 WP_001234585.1 DUF932 domain-containing protein -
  B0908_RS05715 (B0908_05715) - 1138944..1139189 (+) 246 WP_001164966.1 hypothetical protein -
  B0908_RS05720 (B0908_05720) - 1139283..1139756 (+) 474 WP_001542276.1 antirestriction protein -
  B0908_RS05725 (B0908_05725) radC 1139772..1140248 (+) 477 WP_001186727.1 RadC family protein Machinery gene
  B0908_RS05730 (B0908_05730) - 1140311..1140532 (+) 222 WP_000692315.1 DUF987 domain-containing protein -
  B0908_RS05735 (B0908_05735) - 1140551..1141195 (+) 645 WP_000086759.1 hypothetical protein -
  B0908_RS05740 (B0908_05740) cbeA 1141245..1141622 (+) 378 WP_001552747.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  B0908_RS05745 (B0908_05745) - 1141669..1142043 (+) 375 WP_001094434.1 TA system toxin CbtA family protein -
  B0908_RS05750 (B0908_05750) - 1142040..1142531 (+) 492 WP_000976859.1 DUF5983 family protein -
  B0908_RS05755 (B0908_05755) - 1142543..1142740 (+) 198 WP_000839257.1 DUF957 domain-containing protein -
  B0908_RS05760 (B0908_05760) - 1142833..1143675 (+) 843 WP_001280460.1 DUF4942 domain-containing protein -
  B0908_RS05770 (B0908_05770) ghrA 1144146..1145084 (+) 939 WP_000351298.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=181763 B0908_RS05725 WP_001186727.1 1139772..1140248(+) (radC) [Escherichia coli NU14]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=181763 B0908_RS05725 WP_001186727.1 1139772..1140248(+) (radC) [Escherichia coli NU14]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399