Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   A7X73_RS05010 Genome accession   NZ_CP015642
Coordinates   1093629..1094672 (+) Length   347 a.a.
NCBI ID   WP_002481663.1    Uniprot ID   -
Organism   Staphylococcus simulans strain MR1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1088629..1099672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7X73_RS04985 (A7X73_04945) - 1089632..1090351 (+) 720 WP_105966989.1 type 1 glutamine amidotransferase -
  A7X73_RS04990 (A7X73_04950) - 1090434..1091420 (-) 987 WP_002481667.1 FUSC family protein -
  A7X73_RS04995 (A7X73_04955) map 1091640..1092404 (+) 765 WP_060803962.1 type I methionyl aminopeptidase -
  A7X73_RS05000 (A7X73_04960) - 1092520..1092915 (+) 396 WP_002481665.1 hypothetical protein -
  A7X73_RS05005 (A7X73_04965) liaF 1092931..1093632 (+) 702 WP_002481664.1 cell wall-active antibiotics response protein LiaF -
  A7X73_RS05010 (A7X73_04970) vraS 1093629..1094672 (+) 1044 WP_002481663.1 sensor histidine kinase Regulator
  A7X73_RS05015 (A7X73_04975) vraR 1094662..1095291 (+) 630 WP_002481662.1 response regulator transcription factor Regulator
  A7X73_RS05020 (A7X73_04980) - 1095362..1095940 (-) 579 WP_002481661.1 beta-class carbonic anhydrase -
  A7X73_RS05025 (A7X73_04985) - 1096148..1097224 (-) 1077 WP_002481660.1 YihY/virulence factor BrkB family protein -
  A7X73_RS05030 (A7X73_04990) - 1097355..1097645 (-) 291 WP_002481659.1 hypothetical protein -
  A7X73_RS05035 (A7X73_04995) - 1097653..1098117 (-) 465 WP_023015860.1 low molecular weight protein-tyrosine-phosphatase -
  A7X73_RS05040 (A7X73_05000) - 1098341..1098547 (+) 207 WP_002481657.1 DUF1128 family protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39897.15 Da        Isoelectric Point: 4.8944

>NTDB_id=181672 A7X73_RS05010 WP_002481663.1 1093629..1094672(+) (vraS) [Staphylococcus simulans strain MR1]
MNHYIRAIGSMLILNYSILAIFFFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNIIVILMSIIVGSVLAYKVNEQNDWIKT
QIEHSIEGEVVGINDQNIELYQETLDIYHTLVPLNQELHRLRIKTQDLTNETYNLNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESPLEPPLDQQIPTLEKMVQDSQLEMRALLLHLRPLGLKDRSLGEGIKDLVVDLQKKVPMKVVYDI
EDFEVPKGIEDHLFRITQEGISNTLRHAEGTKLTIDLFNKDDYLLLRIQDDGKGFDVDEKMEKSYGLKNMRERALEIGAT
LHIVSLPGAGTRIEVKAPLNKEENDGD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=181672 A7X73_RS05010 WP_002481663.1 1093629..1094672(+) (vraS) [Staphylococcus simulans strain MR1]
ATGAACCACTATATCAGAGCCATCGGTTCGATGCTGATATTGAACTATAGTATATTAGCGATTTTCTTTTTTATAGACAA
AGTATTCGTCAACATCATCTACTTTCAAGGAATGTTTTATACGCAGATTTTCGGCATTCCTGTTTTCTTATTTTTAAATA
TTATAGTGATTTTGATGAGTATTATTGTTGGTTCTGTGTTAGCGTATAAAGTGAACGAACAAAATGATTGGATTAAAACA
CAAATTGAACATTCCATTGAAGGGGAAGTTGTCGGTATTAATGATCAAAATATCGAACTCTACCAAGAAACTTTGGATAT
CTATCATACACTTGTGCCATTAAACCAAGAATTACATCGACTACGTATTAAAACACAAGATTTGACCAACGAAACATATA
ATTTAAATGACGTTAAAGTGAAGAAAATTATAGAAGATGAACGCCAGCGTTTAGCTAGGGAATTGCATGATTCAGTTAGT
CAGCAATTATTTGCGGCAAGTATGATGTTATCGGCGATTAAGGAATCACCACTTGAACCGCCGCTTGATCAGCAAATTCC
GACACTAGAAAAGATGGTACAAGATTCGCAACTAGAAATGCGTGCATTGTTATTACATTTAAGACCGCTTGGCTTAAAAG
ATCGCTCACTTGGGGAAGGAATTAAAGATCTTGTTGTGGACTTACAAAAGAAAGTGCCTATGAAAGTAGTTTATGATATT
GAAGACTTTGAGGTACCAAAAGGCATAGAAGATCATTTATTCCGTATCACCCAAGAAGGGATTTCCAATACACTGCGACA
TGCAGAAGGCACAAAATTAACGATAGATTTATTTAATAAAGATGATTATCTGTTATTGCGTATTCAAGATGATGGTAAAG
GCTTTGATGTAGATGAAAAAATGGAGAAAAGCTATGGATTGAAGAATATGCGAGAGCGAGCATTAGAAATCGGGGCAACA
CTGCATATTGTTTCTTTGCCTGGGGCAGGGACAAGAATTGAAGTGAAGGCTCCATTGAATAAGGAGGAAAATGATGGCGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

86.167

100

0.862


Multiple sequence alignment