Detailed information NTG0181663

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BWL12_RS15060
• Genome accession: NZ_CP019629
• Coordinates: 2868155..2869147 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain MGY
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2863155..2874147

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BWL12_RS15040 (BWL12_15250)	otnK	2863931..2865097 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
BWL12_RS15045 (BWL12_15255)	ygbL	2865189..2865827 (+)	639	WP_001278994.1	aldolase	-
BWL12_RS15050 (BWL12_15260)	ygbM	2865832..2866608 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
BWL12_RS15055 (BWL12_15265)	ygbN	2866697..2868061 (+)	1365	WP_000104441.1	GntP family transporter	-
BWL12_RS15060 (BWL12_15270)	rpoS	2868155..2869147 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
BWL12_RS15065 (BWL12_15275)	nlpD	2869210..2870304 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
BWL12_RS15070 (BWL12_15280)	pcm	2870489..2871115 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BWL12_RS15075 (BWL12_15285)	surE	2871109..2871870 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BWL12_RS15080 (BWL12_15290)	truD	2871851..2872900 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
BWL12_RS15085 (BWL12_15295)	ispF	2872897..2873376 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BWL12_RS15090 (BWL12_15300)	ispD	2873376..2874086 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=181663 BWL12_RS15060 WP_000081588.1 2868155..2869147(-) (rpoS) [Escherichia coli strain MGY]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=181663 BWL12_RS15060 WP_000081588.1 2868155..2869147(-) (rpoS) [Escherichia coli strain MGY]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715