Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BWL12_RS14785 Genome accession   NZ_CP019629
Coordinates   2815814..2816329 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain MGY     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2810814..2821329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWL12_RS14760 (BWL12_14960) ygaZ 2811213..2811950 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  BWL12_RS14765 (BWL12_14965) ygaH 2811940..2812275 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  BWL12_RS14770 (BWL12_14970) emrR 2812366..2812896 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BWL12_RS14775 (BWL12_14975) emrA 2813023..2814195 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BWL12_RS14780 (BWL12_14980) emrB 2814212..2815750 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BWL12_RS14785 (BWL12_14985) luxS 2815814..2816329 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  BWL12_RS14790 (BWL12_14990) gshA 2816479..2818035 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BWL12_RS14795 (BWL12_14995) yqaA 2818108..2818536 (-) 429 WP_001287454.1 YqaA family protein -
  BWL12_RS14800 (BWL12_15000) yqaB 2818533..2819099 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BWL12_RS14830 (BWL12_15030) csrA 2820557..2820742 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=181660 BWL12_RS14785 WP_001130211.1 2815814..2816329(-) (luxS) [Escherichia coli strain MGY]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=181660 BWL12_RS14785 WP_001130211.1 2815814..2816329(-) (luxS) [Escherichia coli strain MGY]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731