Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   BSA171_RS13000 Genome accession   NZ_CP015611
Coordinates   2512417..2514519 (+) Length   700 a.a.
NCBI ID   WP_075611323.1    Uniprot ID   -
Organism   Bacillus safensis strain U17-1     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2507417..2519519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS12960 (BSA171_12760) - 2507728..2507916 (+) 189 WP_003211747.1 YkvS family protein -
  BSA171_RS12965 (BSA171_12765) - 2508042..2508260 (-) 219 WP_039178087.1 hypothetical protein -
  BSA171_RS12975 (BSA171_12775) queF 2508520..2509017 (-) 498 WP_003211403.1 preQ(1) synthase -
  BSA171_RS12980 (BSA171_12780) queE 2509033..2509764 (-) 732 WP_075611325.1 7-carboxy-7-deazaguanine synthase QueE -
  BSA171_RS12985 (BSA171_12785) queD 2509757..2510197 (-) 441 WP_048238732.1 6-carboxytetrahydropterin synthase QueD -
  BSA171_RS12990 (BSA171_12790) queC 2510198..2510854 (-) 657 WP_075611324.1 7-cyano-7-deazaguanine synthase QueC -
  BSA171_RS12995 (BSA171_12795) - 2511130..2512173 (-) 1044 WP_041085022.1 membrane protein -
  BSA171_RS13000 (BSA171_12800) clpC 2512417..2514519 (+) 2103 WP_075611323.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  BSA171_RS13005 (BSA171_12805) motA 2514897..2515691 (+) 795 WP_041085024.1 flagellar motor stator protein MotA -
  BSA171_RS13010 (BSA171_12810) motB 2515684..2516454 (+) 771 WP_041085025.1 flagellar motor protein MotB -
  BSA171_RS13015 (BSA171_12815) - 2516483..2516938 (-) 456 WP_034281539.1 MarR family winged helix-turn-helix transcriptional regulator -
  BSA171_RS13020 (BSA171_12820) gerPC 2517143..2518648 (+) 1506 WP_075611322.1 spore germination protein GerPC -
  BSA171_RS13025 (BSA171_12825) - 2518695..2518937 (-) 243 WP_041085027.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77904.52 Da        Isoelectric Point: 5.0317

>NTDB_id=181459 BSA171_RS13000 WP_075611323.1 2512417..2514519(+) (clpC) [Bacillus safensis strain U17-1]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQQAGHAPNMEQSKQKGLLDELGRN
LTDGAIAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTPDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTDKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKDRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSADKTVKVGFQSDQEEAIEEQSLIDSLSSYFKPEFLNRFDSIIQFDSLDREDLVKIVNLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEHLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=181459 BSA171_RS13000 WP_075611323.1 2512417..2514519(+) (clpC) [Bacillus safensis strain U17-1]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTCAGCTTTTTGGAGGAAGTTCAT
TCTTCTCTCAGCAGGCAGGTCATGCCCCAAACATGGAGCAATCAAAGCAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAATTGCTGGTTTAATTGATCCAGTCATTGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTCATTGGTGAACCAGGTGTTGGGAAAACAGCGATTGCAGAAGGACTCGCGC
TGAAAATTGCGAGCGGCGATGTGCCAAATAAATTAAAGAACAAACAGATCTATTTATTAGATGTTTCTTCACTTGTCGCA
AACACAGGTGTACGAGGTCAATTTGAAGAAAGAATGAAGCAGTTAATTAAAGAACTGCAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCACCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCAAGAGGCGAACTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGACGCTTCCAGCCCGTCATCGTGGATGAACCAACACCAGATGAAGCGATAGACATCTTAAAAGGTATTCAAGATAA
GTACGAGGCCTATCATGGTGTCACCTATTCAGATGAAGCCATCAAAGCGTGCGTTCAATTATCTTCGCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATCTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAACTGACAAACCGACTAGCGCAAATTGCCGCAGAAAAACAGGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCTATTGAAGCAAGACTTCAAAACAAAACAACTGACAAAGAGCATATCGTCACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGTAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGATGTCCGTCTAAAAGCACGAGTAATCGGGCAGGAGCATGCGGTTGATAAAGTTGCGAAAGCCGTGAAAAG
AAGCAGAGCTGGATTAAAATCGAAAGATAGACCGACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACTG
AATTGTCTAAAACACTGGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATACGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCTGGCCAGTTGACTGAAAAAGT
GCGCAGAAAACCTTACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCTGATGTACAACACATGTTCCTTCAAA
TCATGGAAGATGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGTGCAGATAAAACGGTCAAGGTCGGCTTCCAGTCTGATCAGGAGGAAGCAATTGAGGAACAATCACTCATTGA
TTCACTCAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAATTTGATTCACTAGACAGAGAGG
ACTTAGTGAAGATTGTTAATCTTTTGCTTAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACAGTCCATGTCACA
AATGAAGCGAAAGAAAAAATCGCAGAGCTTGGATATCACCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATCCAAGA
GCATGTTGAAGATCAAATGACGGAGATCCTGCTTGAAGAGGAGCATCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTTGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-689)

AAA lid domain (AAA_lid_9)

(254-353)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.504

100

0.596
  clpE Streptococcus mutans UA159

57.202

100

0.59
  clpE Streptococcus pneumoniae Rx1

55.663

100

0.576
  clpE Streptococcus pneumoniae D39

55.663

100

0.576
  clpE Streptococcus pneumoniae R6

55.663

100

0.576
  clpE Streptococcus pneumoniae TIGR4

55.663

100

0.576
  clpC Bacillus subtilis subsp. subtilis str. 168

53.731

95.714

0.514
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.642

90.857

0.433
  clpC Streptococcus thermophilus LMD-9

45.975

92.286

0.424
  clpC Streptococcus thermophilus LMG 18311

45.82

92.286

0.423
  clpC Streptococcus mutans UA159

44.018

93.143

0.41
  clpC Streptococcus pneumoniae TIGR4

44.618

91.571

0.409
  clpC Streptococcus pneumoniae Rx1

44.811

90.857

0.407
  clpC Streptococcus pneumoniae D39

44.811

90.857

0.407

Multiple sequence alignment