Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BSA171_RS12610 Genome accession   NZ_CP015611
Coordinates   2438204..2438482 (-) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis strain U17-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2433204..2443482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS12590 (BSA171_12390) ade 2433209..2434939 (-) 1731 WP_075611349.1 adenine deaminase -
  BSA171_RS12595 (BSA171_12395) - 2435201..2435869 (-) 669 WP_041084969.1 potassium channel family protein -
  BSA171_RS12600 (BSA171_12400) - 2435907..2436743 (-) 837 WP_041084970.1 gamma-glutamylcyclotransferase -
  BSA171_RS12605 (BSA171_12405) - 2436748..2438058 (-) 1311 WP_073979444.1 ATP-binding protein -
  BSA171_RS12610 (BSA171_12410) abrB 2438204..2438482 (-) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BSA171_RS12615 (BSA171_12415) mreBH 2438759..2439766 (+) 1008 WP_041084972.1 rod-share determining protein MreBH -
  BSA171_RS19655 - 2439841..2439972 (+) 132 WP_003210922.1 protein YkpC -
  BSA171_RS12620 (BSA171_12420) - 2440079..2441311 (+) 1233 WP_075611348.1 aminopeptidase -
  BSA171_RS12625 (BSA171_12425) - 2441347..2442966 (-) 1620 WP_041084974.1 ABC-F family ATP-binding cassette domain-containing protein -
  BSA171_RS12630 (BSA171_12430) - 2443110..2443385 (+) 276 WP_075611347.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=181456 BSA171_RS12610 WP_024424746.1 2438204..2438482(-) (abrB) [Bacillus safensis strain U17-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=181456 BSA171_RS12610 WP_024424746.1 2438204..2438482(-) (abrB) [Bacillus safensis strain U17-1]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543

Multiple sequence alignment