Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BSA171_RS11745 Genome accession   NZ_CP015611
Coordinates   2269962..2270864 (-) Length   300 a.a.
NCBI ID   WP_075611389.1    Uniprot ID   -
Organism   Bacillus safensis strain U17-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2264962..2275864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS11730 (BSA171_11550) xerC 2265338..2266255 (-) 918 WP_041084864.1 tyrosine recombinase XerC -
  BSA171_RS11735 (BSA171_11555) trmFO 2266318..2267622 (-) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BSA171_RS11740 (BSA171_11560) topA 2267693..2269768 (-) 2076 WP_075611390.1 type I DNA topoisomerase -
  BSA171_RS11745 (BSA171_11565) dprA 2269962..2270864 (-) 903 WP_075611389.1 DNA-processing protein DprA Machinery gene
  BSA171_RS11750 (BSA171_11570) sucD 2270928..2271829 (-) 902 Protein_2294 succinate--CoA ligase subunit alpha -
  BSA171_RS11755 (BSA171_11575) sucC 2271852..2273012 (-) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  BSA171_RS11760 (BSA171_11580) - 2273189..2273464 (-) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  BSA171_RS11765 (BSA171_11585) - 2273461..2275200 (-) 1740 WP_075611388.1 glycosyltransferase -
  BSA171_RS11770 (BSA171_11590) - 2275220..2275804 (-) 585 Protein_2298 ribonuclease HII -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34150.47 Da        Isoelectric Point: 8.5936

>NTDB_id=181455 BSA171_RS11745 WP_075611389.1 2269962..2270864(-) (dprA) [Bacillus safensis strain U17-1]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRAFQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKNLGVVGTRLPSSYGEACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFSFSNVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=181455 BSA171_RS11745 WP_075611389.1 2269962..2270864(-) (dprA) [Bacillus safensis strain U17-1]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTACTTACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAAGATCGAGCATTCCAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCAAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAATTTAGGTGTAGTCGGTACGCGACTTCCATCGTCTTATGGAGAAGCATGTGTGA
AAAAAATTGTTGGTGAGCTTGTCAAAGAAGAGTGGATGATTGTTAGTGGTCTAGCTAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGGAACAAAGGGAAAACGATCGGCATTATAGCAGGCGGCTTTCAGCATTTATACCCAAAAGAGCATGT
GCAAATGGCTCAATATATGGGCGAGCATCATTTGCTTTTGTCAGAGCATCCGCCTTATGTCAAGCCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGGACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCGCTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCCGGATCCATATTTGATTCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCAGCAACG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.793

99.667

0.377

Multiple sequence alignment