Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BSA171_RS10885 Genome accession   NZ_CP015611
Coordinates   2095475..2095855 (-) Length   126 a.a.
NCBI ID   WP_228280000.1    Uniprot ID   -
Organism   Bacillus safensis strain U17-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2090475..2100855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS10850 (BSA171_10675) - 2091057..2091287 (-) 231 WP_075611439.1 DUF896 domain-containing protein -
  BSA171_RS10855 (BSA171_10680) - 2091357..2092004 (-) 648 WP_073979991.1 recombinase family protein -
  BSA171_RS10860 (BSA171_10685) yneA 2092022..2092333 (-) 312 WP_024425130.1 cell division suppressor protein YneA -
  BSA171_RS10865 (BSA171_10690) lexA 2092493..2093113 (+) 621 WP_024425129.1 transcriptional repressor LexA -
  BSA171_RS10870 (BSA171_10695) - 2093159..2093608 (-) 450 WP_041085131.1 hypothetical protein -
  BSA171_RS10875 (BSA171_10700) - 2093904..2094446 (+) 543 WP_075611438.1 IseA DL-endopeptidase inhibitor family protein -
  BSA171_RS10880 (BSA171_10705) - 2094479..2095327 (-) 849 WP_039178899.1 STAS domain-containing protein -
  BSA171_RS10885 (BSA171_10710) nucA/comI 2095475..2095855 (-) 381 WP_228280000.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BSA171_RS10890 (BSA171_10715) - 2096112..2097020 (-) 909 WP_075611437.1 trypsin-like serine peptidase -
  BSA171_RS10895 (BSA171_10720) - 2097215..2100358 (-) 3144 WP_075611436.1 bifunctional cytochrome P450/NADPH--P450 reductase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13757.50 Da        Isoelectric Point: 8.5068

>NTDB_id=181451 BSA171_RS10885 WP_228280000.1 2095475..2095855(-) (nucA/comI) [Bacillus safensis strain U17-1]
MGMLLGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=181451 BSA171_RS10885 WP_228280000.1 2095475..2095855(-) (nucA/comI) [Bacillus safensis strain U17-1]
ATGGGCATGTTGTTAGGTGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACA
GGAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGGATTCCGACAAAACCTGGATTTGACCGGGATGAATGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTTCAATATGTCAGTCCATCTGATAATAGGGGAGCAGGCTCATG
GGTCGGGCACCAAATAAGCGGATTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.349

100

0.563

Multiple sequence alignment