Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BSA171_RS09410 Genome accession   NZ_CP015611
Coordinates   1797870..1798505 (-) Length   211 a.a.
NCBI ID   WP_034280474.1    Uniprot ID   -
Organism   Bacillus safensis strain U17-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1792870..1803505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS09390 (BSA171_09250) - 1793006..1793710 (+) 705 WP_064497517.1 DnaD domain-containing protein -
  BSA171_RS09395 (BSA171_09255) nth 1793728..1794390 (+) 663 WP_024422776.1 endonuclease III -
  BSA171_RS09400 (BSA171_09260) - 1794387..1794896 (+) 510 WP_075611558.1 YpoC family protein -
  BSA171_RS09405 (BSA171_09265) - 1795136..1797850 (-) 2715 WP_075611557.1 PBP1A family penicillin-binding protein -
  BSA171_RS09410 (BSA171_09270) recU 1797870..1798505 (-) 636 WP_034280474.1 Holliday junction resolvase RecU Machinery gene
  BSA171_RS09415 (BSA171_09275) - 1798551..1799507 (+) 957 WP_075611556.1 DUF2515 domain-containing protein -
  BSA171_RS09420 (BSA171_09280) sspM 1799531..1799635 (-) 105 WP_039179471.1 acid-soluble spore protein SspM -
  BSA171_RS09425 (BSA171_09285) - 1799833..1800066 (+) 234 WP_224928722.1 DUF5446 family protein -
  BSA171_RS09430 (BSA171_09290) - 1800116..1800496 (+) 381 WP_228280239.1 YppE family protein -
  BSA171_RS09435 (BSA171_09295) - 1800605..1801057 (+) 453 WP_039179462.1 YppG family protein -
  BSA171_RS09440 (BSA171_09300) - 1801078..1801497 (-) 420 WP_075611555.1 Hsp20/alpha crystallin family protein -
  BSA171_RS09445 (BSA171_09305) - 1801667..1802173 (+) 507 WP_039183169.1 PTS glucose transporter subunit IIA -
  BSA171_RS09450 (BSA171_09310) - 1802227..1803345 (-) 1119 WP_231120194.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.71 Da        Isoelectric Point: 9.8310

>NTDB_id=181450 BSA171_RS09410 WP_034280474.1 1797870..1798505(-) (recU) [Bacillus safensis strain U17-1]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=181450 BSA171_RS09410 WP_034280474.1 1797870..1798505(-) (recU) [Bacillus safensis strain U17-1]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACGGACTATAACGGGGTGTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGCATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAG
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

95.735

0.701

Multiple sequence alignment