Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BSA171_RS08460 Genome accession   NZ_CP015611
Coordinates   1624046..1625779 (+) Length   577 a.a.
NCBI ID   WP_034280267.1    Uniprot ID   -
Organism   Bacillus safensis strain U17-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1619046..1630779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS08435 (BSA171_08310) - 1619144..1619404 (+) 261 WP_041086137.1 exodeoxyribonuclease VII small subunit -
  BSA171_RS08440 (BSA171_08315) - 1619388..1620284 (+) 897 WP_413784660.1 polyprenyl synthetase family protein -
  BSA171_RS08445 (BSA171_08320) dxs 1620435..1622336 (+) 1902 WP_075611622.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BSA171_RS08450 (BSA171_08325) - 1622333..1623187 (+) 855 WP_075611621.1 TlyA family RNA methyltransferase -
  BSA171_RS08455 (BSA171_08330) ahrC 1623563..1624012 (+) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  BSA171_RS08460 (BSA171_08335) recN 1624046..1625779 (+) 1734 WP_034280267.1 DNA repair protein RecN Machinery gene
  BSA171_RS08465 (BSA171_08340) spoIVB 1625978..1627255 (+) 1278 WP_041086128.1 SpoIVB peptidase -
  BSA171_RS08470 (BSA171_08345) spo0A 1627551..1628354 (+) 804 WP_041086125.1 sporulation transcription factor Spo0A Regulator
  BSA171_RS08480 (BSA171_08355) - 1628811..1629911 (+) 1101 WP_073979631.1 Rap family tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64725.54 Da        Isoelectric Point: 4.7748

>NTDB_id=181448 BSA171_RS08460 WP_034280267.1 1624046..1625779(+) (recN) [Bacillus safensis strain U17-1]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=181448 BSA171_RS08460 WP_034280267.1 1624046..1625779(+) (recN) [Bacillus safensis strain U17-1]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTCCT
AACAGGGGAAACAGGTGCCGGAAAATCCATCATGATTGATGCTGTCTCACTTCTCGTGGGAGGAAGAGGGTCCTCTGAAT
TTGTTCGCTACGGTGAAAAAAAAGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGTGAAGTAGGACGGCTTTTGCTTGATATACATGGTCAGCACGATA
ACCAGCTGCTTATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCAGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTAAGACAGCTGTCCGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCAGCGCAGTTAGAGCCGGGAGAAGATGAGCGGCTTC
AGGAAGAGCGTCATCAAATCAGCAACTACGAGAAAATCTATTCCTCACTCCAAAACGCGTATAACGCTTTGCGTAATGAG
CAAGGAGGACTAGATTGGGTTGGCATGTCCTCAAGCGAGCTTGAGCAGGTGTCTGAGATCAATGATGATTTGAAAAAGCT
ATCTGAACAAGTATCGAATTCCTACTACTTATTAGAGGATTCAACTTTTCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCATCTGCAGACGCT
CAAAAATAAATTGGATGCGATGAGCCGTGATGCCCTGCTGGAAGCACTTAACGTTTCGGAGTTACGTAAAAAATGGGCCA
AAAAGCTAGCGAAGCAAATTCAAACGGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCTTTTGGCAGCACCGATTGTCCGCTATTAGACGGAAAACCGGTCCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATCTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCCAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGC
GTGAGCGGCAGAGTCGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGTATTACACA
TCTGCCTCAAGTAGCCGCAATGGCTGACACACATCTCTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAACACGCAAAAGAACTATTGCACCAAGCAAATGATGTTAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.91

100

0.759

Multiple sequence alignment