Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BSA171_RS07940 Genome accession   NZ_CP015611
Coordinates   1536908..1537678 (+) Length   256 a.a.
NCBI ID   WP_047202320.1    Uniprot ID   A0AAX0Z8L3
Organism   Bacillus safensis strain U17-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1531908..1542678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS07910 (BSA171_07800) - 1532216..1534327 (+) 2112 WP_370332964.1 HD family phosphohydrolase -
  BSA171_RS07915 (BSA171_07805) ybeY 1534328..1534807 (+) 480 WP_041086242.1 rRNA maturation RNase YbeY -
  BSA171_RS07920 (BSA171_07810) - 1534785..1535171 (+) 387 WP_024423020.1 diacylglycerol kinase family protein -
  BSA171_RS07925 (BSA171_07815) - 1535285..1535683 (+) 399 WP_075611656.1 cytidine deaminase -
  BSA171_RS07930 (BSA171_07820) era 1535676..1536581 (+) 906 WP_007501305.1 GTPase Era -
  BSA171_RS07935 - 1536729..1536872 (+) 144 WP_003217288.1 YqzL family protein -
  BSA171_RS07940 (BSA171_07825) recO 1536908..1537678 (+) 771 WP_047202320.1 DNA repair protein RecO Machinery gene
  BSA171_RS07945 (BSA171_07830) glyQ 1538008..1538895 (+) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  BSA171_RS07950 (BSA171_07835) glyS 1538888..1540933 (+) 2046 WP_073979121.1 glycine--tRNA ligase subunit beta -
  BSA171_RS07955 (BSA171_07840) - 1541101..1541739 (+) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  BSA171_RS07960 (BSA171_07845) - 1541765..1542586 (+) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29258.91 Da        Isoelectric Point: 8.1204

>NTDB_id=181444 BSA171_RS07940 WP_047202320.1 1536908..1537678(+) (recO) [Bacillus safensis strain U17-1]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAYAAYMTELIDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=181444 BSA171_RS07940 WP_047202320.1 1536908..1537678(+) (recO) [Bacillus safensis strain U17-1]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGCGTGATGGCAAGAGGCGCAAAAAAATCAAACAGCCGCCTTTCAGCCATAAGTCAGCCGTTTT
TATACGGCACCTTTCTTATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGGCC
ATTCGGGAAGACTTATTTCTGACCGCATATGCCGCATATATGACGGAATTGATTGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAACGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTTGATCAATGTGTTCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTGTC
CCCCGCAGCTGCAAGGCTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAGCCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCTGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754

Multiple sequence alignment