Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BSA171_RS00310 Genome accession   NZ_CP015611
Coordinates   52624..52914 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus safensis strain U17-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 47624..57914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS00290 (BSA171_00290) - 47813..49015 (-) 1203 WP_075612248.1 G5 and 3D domain-containing protein -
  BSA171_RS00295 (BSA171_00295) - 49260..50027 (-) 768 WP_041085329.1 TatD family hydrolase -
  BSA171_RS00300 (BSA171_00300) metG 50109..52109 (-) 2001 WP_075612247.1 methionine--tRNA ligase -
  BSA171_RS00310 (BSA171_00305) abrB 52624..52914 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BSA171_RS00315 (BSA171_00310) rsmI 52960..53841 (-) 882 WP_073979324.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BSA171_RS00320 (BSA171_00315) - 53816..54115 (-) 300 WP_039175889.1 GIY-YIG nuclease family protein -
  BSA171_RS00325 (BSA171_00320) - 54102..54845 (-) 744 WP_075612245.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BSA171_RS00330 (BSA171_00325) yabA 54901..55254 (-) 354 WP_039175883.1 DNA replication initiation control protein YabA -
  BSA171_RS00335 (BSA171_00330) - 55269..56096 (-) 828 WP_024425628.1 stage 0 sporulation family protein -
  BSA171_RS00340 (BSA171_00335) holB 56099..57088 (-) 990 WP_041085337.1 DNA polymerase III subunit delta' -
  BSA171_RS00345 (BSA171_00340) - 57100..57540 (-) 441 WP_073979327.1 YaaR family protein -
  BSA171_RS00350 (BSA171_00345) - 57553..57882 (-) 330 WP_024425625.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=181418 BSA171_RS00310 WP_087975202.1 52624..52914(+) (abrB) [Bacillus safensis strain U17-1]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=181418 BSA171_RS00310 WP_087975202.1 52624..52914(+) (abrB) [Bacillus safensis strain U17-1]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment