Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BSA41_RS19375 Genome accession   NZ_CP015610
Coordinates   3705232..3705660 (-) Length   142 a.a.
NCBI ID   WP_041089004.1    Uniprot ID   -
Organism   Bacillus safensis strain U41     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3700232..3710660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA41_RS19345 (BSA41_18960) - 3700394..3700723 (+) 330 WP_041089315.1 YckD family protein -
  BSA41_RS19350 (BSA41_18965) - 3700766..3701530 (-) 765 WP_041088995.1 MBL fold metallo-hydrolase -
  BSA41_RS19355 (BSA41_18970) - 3701646..3702062 (+) 417 WP_039176401.1 Lrp/AsnC family transcriptional regulator -
  BSA41_RS19360 (BSA41_18975) - 3702091..3702897 (+) 807 WP_041088997.1 aminoglycoside N(3)-acetyltransferase -
  BSA41_RS19365 (BSA41_18980) - 3702899..3703285 (-) 387 WP_075612349.1 competence protein ComJ -
  BSA41_RS19370 (BSA41_18985) - 3703406..3705103 (-) 1698 WP_041089002.1 methyl-accepting chemotaxis protein -
  BSA41_RS19375 (BSA41_18990) nucA/comI 3705232..3705660 (-) 429 WP_041089004.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BSA41_RS19380 (BSA41_18995) - 3706028..3708097 (+) 2070 WP_075612350.1 hydantoinase/oxoprolinase family protein -
  BSA41_RS19385 (BSA41_19000) - 3708087..3710075 (+) 1989 WP_075612351.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15952.92 Da        Isoelectric Point: 6.1349

>NTDB_id=181417 BSA41_RS19375 WP_041089004.1 3705232..3705660(-) (nucA/comI) [Bacillus safensis strain U41]
MKLLKMILLLLLIVIGVATGYIQLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDRS
LHGIPTKHGYDRDEWPMAMCKEGGSGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=181417 BSA41_RS19375 WP_041089004.1 3705232..3705660(-) (nucA/comI) [Bacillus safensis strain U41]
ATGAAACTTCTTAAAATGATTCTCTTGCTTTTATTGATTGTTATTGGTGTAGCAACAGGCTATATCCAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACGATTCATTTTCCATCAGACCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCTTCCATTTGTACAATTGACCGTAAACATAGTGATGAGCAGAGAGATCGATCA
CTACATGGCATTCCAACAAAGCACGGGTATGACCGAGACGAATGGCCAATGGCGATGTGCAAAGAAGGAGGCAGTGGAGC
TTCTGTCAAATATGTACGCCCTTCTGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATTCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.789

80.282

0.528

Multiple sequence alignment