Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BSA41_RS17520 Genome accession   NZ_CP015610
Coordinates   3360516..3361628 (+) Length   370 a.a.
NCBI ID   WP_041089369.1    Uniprot ID   -
Organism   Bacillus safensis strain U41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3355516..3366628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA41_RS17495 (BSA41_17145) rnpA 3356263..3356622 (-) 360 WP_041089372.1 ribonuclease P protein component -
  BSA41_RS17500 rpmH 3356701..3356835 (-) 135 WP_073208224.1 50S ribosomal protein L34 -
  BSA41_RS17505 (BSA41_17150) dnaA 3357456..3358796 (+) 1341 WP_024424073.1 chromosomal replication initiator protein DnaA -
  BSA41_RS17510 (BSA41_17155) dnaN 3358997..3360133 (+) 1137 WP_039175825.1 DNA polymerase III subunit beta -
  BSA41_RS17515 (BSA41_17160) yaaA 3360284..3360499 (+) 216 WP_008360916.1 S4 domain-containing protein YaaA -
  BSA41_RS17520 (BSA41_17165) recF 3360516..3361628 (+) 1113 WP_041089369.1 DNA replication/repair protein RecF Machinery gene
  BSA41_RS17525 (BSA41_17170) remB 3361646..3361891 (+) 246 WP_039175827.1 extracellular matrix regulator RemB -
  BSA41_RS17530 (BSA41_17175) gyrB 3361949..3363865 (+) 1917 WP_041089494.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BSA41_RS17535 (BSA41_17180) gyrA 3364098..3366602 (+) 2505 WP_041089367.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42621.72 Da        Isoelectric Point: 7.3663

>NTDB_id=181412 BSA41_RS17520 WP_041089369.1 3360516..3361628(+) (recF) [Bacillus safensis strain U41]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAATKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLREREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATMKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=181412 BSA41_RS17520 WP_041089369.1 3360516..3361628(+) (recF) [Bacillus safensis strain U41]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAATTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGTAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCTCTCAGCGT
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAACGAAAGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGAGAGAGAAATTGACCGAGGGGTGACACTGTGGGGACCTCACAG
AGATGATCTGCTTTTCTTTGTAAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCTATTCTTCTACTTGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTCCAGACCTTCGTCACCACAACAAGTGT
TGAAGGTATCGATCACGCCACCATGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.198

99.73

0.83

Multiple sequence alignment