Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | BSA41_RS09795 | Genome accession | NZ_CP015610 |
| Coordinates | 1864394..1864729 (+) | Length | 111 a.a. |
| NCBI ID | WP_024422969.1 | Uniprot ID | - |
| Organism | Bacillus safensis strain U41 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1859394..1869729
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSA41_RS09775 (BSA41_09550) | gcvT | 1859882..1860979 (-) | 1098 | WP_075611633.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| BSA41_RS09780 (BSA41_09555) | - | 1861531..1863201 (+) | 1671 | WP_041086161.1 | DEAD/DEAH box helicase | - |
| BSA41_RS09785 (BSA41_09560) | - | 1863216..1864013 (+) | 798 | WP_041086163.1 | YqhG family protein | - |
| BSA41_RS09790 | - | 1864196..1864360 (+) | 165 | WP_075611634.1 | anti-repressor SinI family protein | - |
| BSA41_RS09795 (BSA41_09565) | sinR | 1864394..1864729 (+) | 336 | WP_024422969.1 | transcriptional regulator SinR | Regulator |
| BSA41_RS09800 (BSA41_09570) | tasA | 1864797..1865597 (-) | 801 | WP_075611635.1 | biofilm matrix protein TasA | - |
| BSA41_RS09805 (BSA41_09575) | sipW | 1865655..1866227 (-) | 573 | WP_047202287.1 | signal peptidase I SipW | - |
| BSA41_RS09810 (BSA41_09580) | tapA | 1866279..1866806 (-) | 528 | WP_075611636.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BSA41_RS09815 (BSA41_09585) | - | 1867106..1867384 (+) | 279 | WP_231120214.1 | DUF3889 domain-containing protein | - |
| BSA41_RS09820 (BSA41_09590) | - | 1867417..1867611 (-) | 195 | WP_024718846.1 | YqzE family protein | - |
| BSA41_RS09825 (BSA41_09595) | - | 1867671..1868054 (-) | 384 | WP_075611637.1 | competence type IV pilus minor pilin ComGG | - |
| BSA41_RS09830 (BSA41_09600) | comGF | 1868051..1868455 (-) | 405 | WP_231120191.1 | competence type IV pilus minor pilin ComGF | - |
| BSA41_RS09835 (BSA41_09605) | comGE | 1868490..1868807 (-) | 318 | WP_075611639.1 | competence type IV pilus minor pilin ComGE | - |
| BSA41_RS09840 (BSA41_09610) | comGD | 1868791..1869237 (-) | 447 | WP_075611640.1 | competence type IV pilus minor pilin ComGD | - |
| BSA41_RS09845 (BSA41_09615) | comGC | 1869230..1869523 (-) | 294 | WP_024422977.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12978.56 Da Isoelectric Point: 5.0026
>NTDB_id=181386 BSA41_RS09795 WP_024422969.1 1864394..1864729(+) (sinR) [Bacillus safensis strain U41]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=181386 BSA41_RS09795 WP_024422969.1 1864394..1864729(+) (sinR) [Bacillus safensis strain U41]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |