Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0A   Type   Regulator
Locus tag   BSA41_RS09600 Genome accession   NZ_CP015610
Coordinates   1829288..1830091 (-) Length   267 a.a.
NCBI ID   WP_041086125.1    Uniprot ID   -
Organism   Bacillus safensis strain U41     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context


Location: 1824288..1835091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA41_RS09580 (BSA41_09355) - 1826492..1826728 (+) 237 WP_039179838.1 DUF2627 domain-containing protein -
  BSA41_RS09585 (BSA41_09360) - 1826765..1827502 (-) 738 WP_041086120.1 glycerophosphodiester phosphodiesterase -
  BSA41_RS09590 (BSA41_09365) - 1827731..1828831 (-) 1101 WP_073979631.1 Rap family tetratricopeptide repeat protein -
  BSA41_RS09600 (BSA41_09375) spo0A 1829288..1830091 (-) 804 WP_041086125.1 sporulation transcription factor Spo0A Regulator
  BSA41_RS09605 (BSA41_09380) spoIVB 1830387..1831664 (-) 1278 WP_041086128.1 SpoIVB peptidase -
  BSA41_RS09610 (BSA41_09385) recN 1831863..1833596 (-) 1734 WP_034280267.1 DNA repair protein RecN Machinery gene
  BSA41_RS09615 (BSA41_09390) ahrC 1833630..1834079 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -

Sequence


Protein


Download         Length: 267 a.a.        Molecular weight: 29918.44 Da        Isoelectric Point: 6.3918

>NTDB_id=181384 BSA41_RS09600 WP_041086125.1 1829288..1830091(-) (spo0A) [Bacillus safensis strain U41]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMSKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=181384 BSA41_RS09600 WP_041086125.1 1829288..1830091(-) (spo0A) [Bacillus safensis strain U41]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTACATTGAGGGACAGGA
AGATATGGAAGTACTTGGTGTGGCGTATAATGGTCAGGAATGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGACATTATTATGCCTCATTTAGACGGTCTTGCTGTACTAGAACGCCTCCGTGAAAACAATGAAATGTCAAAACAG
CCAAGTGTGATTATGCTAACGGCATTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCAATCCAAAACAGTGTTCTTCGTAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACAACCATT
ATTCATGAGATTGGCGTGCCTGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCGATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATTACTAAAGTGTTGTACCCAGACATTGCAAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTCGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCTGATCGTCTGCGCTTAGAGCATAGAGCTAG
CTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884


Multiple sequence alignment