Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BSA41_RS06320 Genome accession   NZ_CP015610
Coordinates   1186777..1187679 (+) Length   300 a.a.
NCBI ID   WP_075611389.1    Uniprot ID   -
Organism   Bacillus safensis strain U41     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1181777..1192679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA41_RS06295 (BSA41_06125) - 1181839..1182420 (+) 582 Protein_1225 ribonuclease HII -
  BSA41_RS06300 (BSA41_06130) - 1182440..1184179 (+) 1740 WP_075611388.1 glycosyltransferase -
  BSA41_RS06305 (BSA41_06135) - 1184176..1184451 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  BSA41_RS06310 (BSA41_06140) sucC 1184628..1185788 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  BSA41_RS06315 (BSA41_06145) sucD 1185811..1186713 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  BSA41_RS06320 (BSA41_06150) dprA 1186777..1187679 (+) 903 WP_075611389.1 DNA-processing protein DprA Machinery gene
  BSA41_RS06325 (BSA41_06155) topA 1187873..1189948 (+) 2076 WP_075611390.1 type I DNA topoisomerase -
  BSA41_RS06330 (BSA41_06160) trmFO 1190019..1191323 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BSA41_RS06335 (BSA41_06165) xerC 1191386..1192303 (+) 918 WP_041084864.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34150.47 Da        Isoelectric Point: 8.5936

>NTDB_id=181378 BSA41_RS06320 WP_075611389.1 1186777..1187679(+) (dprA) [Bacillus safensis strain U41]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRAFQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKNLGVVGTRLPSSYGEACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFSFSNVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=181378 BSA41_RS06320 WP_075611389.1 1186777..1187679(+) (dprA) [Bacillus safensis strain U41]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTACTTACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAAGATCGAGCATTCCAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCAAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAATTTAGGTGTAGTCGGTACGCGACTTCCATCGTCTTATGGAGAAGCATGTGTGA
AAAAAATTGTTGGTGAGCTTGTCAAAGAAGAGTGGATGATTGTTAGTGGTCTAGCTAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGGAACAAAGGGAAAACGATCGGCATTATAGCAGGCGGCTTTCAGCATTTATACCCAAAAGAGCATGT
GCAAATGGCTCAATATATGGGCGAGCATCATTTGCTTTTGTCAGAGCATCCGCCTTATGTCAAGCCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGGACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCGCTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCCGGATCCATATTTGATTCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCAGCAACG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.793

99.667

0.377

Multiple sequence alignment