Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BSA145_RS19145 Genome accession   NZ_CP015607
Coordinates   3677112..3677747 (+) Length   211 a.a.
NCBI ID   WP_075623383.1    Uniprot ID   -
Organism   Bacillus safensis strain U14-5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3672112..3682747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA145_RS19105 (BSA145_18700) - 3672267..3673385 (+) 1119 WP_024428115.1 NADH-dependent flavin oxidoreductase -
  BSA145_RS19110 (BSA145_18705) - 3673439..3673945 (-) 507 WP_024422767.1 PTS sugar transporter subunit IIA -
  BSA145_RS19115 (BSA145_18710) - 3674144..3674533 (+) 390 WP_155762197.1 Hsp20/alpha crystallin family protein -
  BSA145_RS19120 (BSA145_18715) - 3674553..3675011 (-) 459 WP_075623381.1 YppG family protein -
  BSA145_RS19125 (BSA145_18720) - 3675120..3675500 (-) 381 WP_224426683.1 YppE family protein -
  BSA145_RS19130 (BSA145_18725) - 3675550..3675783 (-) 234 WP_223251001.1 DUF5446 family protein -
  BSA145_RS19135 (BSA145_18730) sspM 3675981..3676085 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  BSA145_RS19140 (BSA145_18735) - 3676109..3677065 (-) 957 WP_075623382.1 DUF2515 domain-containing protein -
  BSA145_RS19145 (BSA145_18740) recU 3677112..3677747 (+) 636 WP_075623383.1 Holliday junction resolvase RecU Machinery gene
  BSA145_RS19150 (BSA145_18745) - 3677767..3680475 (+) 2709 WP_075623384.1 PBP1A family penicillin-binding protein -
  BSA145_RS19155 (BSA145_18750) - 3680512..3681021 (-) 510 WP_075623385.1 YpoC family protein -
  BSA145_RS19160 (BSA145_18755) nth 3681018..3681680 (-) 663 WP_024422776.1 endonuclease III -
  BSA145_RS19165 (BSA145_18760) - 3681698..3682402 (-) 705 WP_024422777.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24331.71 Da        Isoelectric Point: 9.8024

>NTDB_id=181350 BSA145_RS19145 WP_075623383.1 3677112..3677747(+) (recU) [Bacillus safensis strain U14-5]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFYFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=181350 BSA145_RS19145 WP_075623383.1 3677112..3677747(+) (recU) [Bacillus safensis strain U14-5]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTGTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGCATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTACTTCTGGGAGCGGCAGAAG
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAGGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.762

95.735

0.706

Multiple sequence alignment