Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BSA145_RS15255 Genome accession   NZ_CP015607
Coordinates   2915568..2915846 (+) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis strain U14-5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2910568..2920846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA145_RS15235 (BSA145_14920) - 2910892..2912511 (+) 1620 WP_024426884.1 ABC-F family ATP-binding cassette domain-containing protein -
  BSA145_RS15245 (BSA145_14925) - 2912738..2913970 (-) 1233 WP_075622959.1 aminopeptidase -
  BSA145_RS22885 - 2914078..2914209 (-) 132 WP_231120637.1 protein YkpC -
  BSA145_RS15250 (BSA145_14930) mreBH 2914284..2915291 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  BSA145_RS15255 (BSA145_14935) abrB 2915568..2915846 (+) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BSA145_RS15260 (BSA145_14940) - 2915992..2917302 (+) 1311 WP_075622960.1 ATP-binding protein -
  BSA145_RS15265 (BSA145_14945) - 2917307..2918143 (+) 837 WP_075622961.1 gamma-glutamylcyclotransferase -
  BSA145_RS15270 (BSA145_14950) - 2918181..2918849 (+) 669 WP_008345123.1 potassium channel family protein -
  BSA145_RS15275 (BSA145_14955) ade 2919112..2920834 (+) 1723 Protein_2962 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=181344 BSA145_RS15255 WP_024424746.1 2915568..2915846(+) (abrB) [Bacillus safensis strain U14-5]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=181344 BSA145_RS15255 WP_024424746.1 2915568..2915846(+) (abrB) [Bacillus safensis strain U14-5]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAACTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543

Multiple sequence alignment