Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   BSA145_RS14825 Genome accession   NZ_CP015607
Coordinates   2833491..2835593 (-) Length   700 a.a.
NCBI ID   WP_075622916.1    Uniprot ID   -
Organism   Bacillus safensis strain U14-5     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2828491..2840593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA145_RS14800 (BSA145_14490) - 2828906..2829148 (+) 243 WP_034322108.1 aspartyl-phosphate phosphatase Spo0E family protein -
  BSA145_RS14805 (BSA145_14495) - 2829195..2830700 (-) 1506 WP_024424677.1 ATP-binding protein -
  BSA145_RS14810 (BSA145_14500) - 2830905..2831360 (+) 456 WP_075622913.1 MarR family winged helix-turn-helix transcriptional regulator -
  BSA145_RS14815 (BSA145_14505) motB 2831552..2832325 (-) 774 WP_075622914.1 flagellar motor protein MotB -
  BSA145_RS14820 (BSA145_14510) motA 2832318..2833112 (-) 795 WP_075622915.1 flagellar motor stator protein MotA -
  BSA145_RS14825 (BSA145_14515) clpC 2833491..2835593 (-) 2103 WP_075622916.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  BSA145_RS14830 (BSA145_14520) - 2835839..2836882 (+) 1044 WP_075622917.1 hypothetical protein -
  BSA145_RS14835 (BSA145_14525) queC 2837157..2837813 (+) 657 WP_041106071.1 7-cyano-7-deazaguanine synthase QueC -
  BSA145_RS14840 (BSA145_14530) queD 2837814..2838254 (+) 441 WP_075622918.1 6-carboxytetrahydropterin synthase QueD -
  BSA145_RS14845 (BSA145_14535) queE 2838247..2838978 (+) 732 WP_047202223.1 7-carboxy-7-deazaguanine synthase QueE -
  BSA145_RS14850 (BSA145_14540) queF 2838994..2839491 (+) 498 WP_024426839.1 preQ(1) synthase -
  BSA145_RS14860 (BSA145_14545) - 2839949..2840317 (-) 369 WP_046310766.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77903.49 Da        Isoelectric Point: 5.0317

>NTDB_id=181341 BSA145_RS14825 WP_075622916.1 2833491..2835593(-) (clpC) [Bacillus safensis strain U14-5]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQAAGHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIDILKGIQDKYEAYHGVTYSDEAVKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALKEEQYEKAAKIRDEEEAIEARLQNKTTDKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGTADKTVKVGFQSDQEEAIEEQSLIDSLSSYFKPEFLNRFDSIIQFDSLDREDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=181341 BSA145_RS14825 WP_075622916.1 2833491..2835593(-) (clpC) [Bacillus safensis strain U14-5]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTCAGCTTTTTGGAGGAAGTTCAT
TCTTCTCTCAGGCAGCAGGTCATGCCCCAAACATGGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCGGGTTTAATTGATCCAGTCATTGGCCGTGATGAAGAAGTTGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCGC
TCAAAATTGCGAGCGGCGATGTGCCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTTTCTTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTGCAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCACCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGCGAACTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGGCGCTTCCAGCCCGTTATCGTAGATGAGCCAACACAAGATGAAGCGATCGATATCTTAAAAGGCATTCAAGATAA
ATACGAAGCCTATCATGGTGTCACATATTCAGATGAAGCGGTCAAAGCGTGCGTTCAATTATCTTCGCGGTATATTCAAG
ACCGTCATTTACCGGATAAAGCCATTGATTTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAGCTGACAAACCGATTAGCGCAAATTGCCGCAGAAAAACAAGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGATTCGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGATAAAGAGCATATCGTTACAG
CAGAGGACATTCAGGCCATAGTGGAACAAAAAACAGGCATTCCTGTCGGGAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGTCTAAAAGCACGAGTGATTGGGCAGGAGCATGCAGTTGATAAAGTGGCGAAAGCCGTGAAAAG
AAGCAGAGCTGGTTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGCTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCTGGCCAGCTGACTGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATGTTCCTGCAAA
TCATGGAAGACGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCACCGCAGATAAAACAGTCAAAGTGGGCTTCCAATCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTGAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAATTTGATTCACTAGACAGAGAGG
ACTTAGTGAAGATTGTTGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACCGTTCATGTCACA
AATGAAGCGAAAGAAAAAATCGCAGAGCTTGGATATCATCCTGCATTTGGTGCTCGTCCACTTCGAAGAACAATCCAAGA
GCACGTTGAAGACCAAATGACGGAGATCCTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAGGGATAA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(253-352)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-687)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.775

100

0.599
  clpE Streptococcus mutans UA159

56.334

100

0.597
  clpE Streptococcus pneumoniae Rx1

55.525

100

0.574
  clpE Streptococcus pneumoniae D39

55.525

100

0.574
  clpE Streptococcus pneumoniae R6

55.525

100

0.574
  clpE Streptococcus pneumoniae TIGR4

55.525

100

0.574
  clpC Bacillus subtilis subsp. subtilis str. 168

53.731

95.714

0.514
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.779

93.143

0.436
  clpC Streptococcus thermophilus LMD-9

46.44

92.286

0.429
  clpC Streptococcus thermophilus LMG 18311

46.285

92.286

0.427
  clpC Streptococcus mutans UA159

44.172

93.143

0.411
  clpC Streptococcus pneumoniae TIGR4

44.637

90.571

0.404
  clpC Streptococcus pneumoniae Rx1

44.833

89.857

0.403
  clpC Streptococcus pneumoniae D39

44.833

89.857

0.403

Multiple sequence alignment