Detailed information    

insolico Bioinformatically predicted

Overview


Name   comK   Type   Regulator
Locus tag   BSA145_RS13415 Genome accession   NZ_CP015607
Coordinates   2557408..2557986 (+) Length   192 a.a.
NCBI ID   WP_024425481.1    Uniprot ID   A0A1L6ZJL9
Organism   Bacillus safensis strain U14-5     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2552408..2562986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA145_RS23325 - 2552900..2553511 (-) 612 WP_404841197.1 methyl-accepting chemotaxis protein -
  BSA145_RS23330 - 2553656..2554195 (-) 540 Protein_2580 protoglobin family protein -
  BSA145_RS13400 (BSA145_13110) - 2554288..2555820 (-) 1533 WP_075622751.1 FAD-dependent oxidoreductase -
  BSA145_RS13405 (BSA145_13115) - 2555963..2556825 (+) 863 Protein_2582 SDR family oxidoreductase -
  BSA145_RS13410 (BSA145_13120) - 2556882..2557118 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  BSA145_RS13415 (BSA145_13125) comK 2557408..2557986 (+) 579 WP_024425481.1 competence protein ComK Regulator
  BSA145_RS13420 (BSA145_13130) - 2558154..2559260 (+) 1107 WP_075622752.1 D-TA family PLP-dependent enzyme -
  BSA145_RS13425 (BSA145_13135) - 2559491..2560387 (+) 897 WP_075622753.1 nuclease-related domain-containing protein -
  BSA145_RS13430 (BSA145_13140) - 2560617..2561099 (+) 483 WP_024425482.1 hypothetical protein -
  BSA145_RS13435 (BSA145_13145) - 2561131..2562570 (-) 1440 WP_075622754.1 PLP-dependent aminotransferase family protein -

Sequence


Protein


Download         Length: 192 a.a.        Molecular weight: 22350.37 Da        Isoelectric Point: 8.7996

>NTDB_id=181330 BSA145_RS13415 WP_024425481.1 2557408..2557986(+) (comK) [Bacillus safensis strain U14-5]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=181330 BSA145_RS13415 WP_024425481.1 2557408..2557986(+) (comK) [Bacillus safensis strain U14-5]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATATGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAATCATCTATATTTTTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATATCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTTGATGGT
GGTCTGCCGAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGTAACAGATATTAG

Domains


Predicted by InterproScan.

(10-158)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1L6ZJL9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62


Multiple sequence alignment