Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BSA145_RS03645 Genome accession   NZ_CP015607
Coordinates   696880..697569 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain U14-5     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 691880..702569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA145_RS03625 (BSA145_03575) - 692571..693638 (+) 1068 WP_075621640.1 glycosyltransferase family 4 protein -
  BSA145_RS03630 (BSA145_03580) - 693674..694765 (-) 1092 WP_075621641.1 LCP family protein -
  BSA145_RS03635 (BSA145_03585) - 694750..695418 (-) 669 WP_012011434.1 YigZ family protein -
  BSA145_RS03640 (BSA145_03590) degS 695640..696815 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  BSA145_RS03645 (BSA145_03595) degU 696880..697569 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BSA145_RS03650 (BSA145_03600) - 697785..698627 (+) 843 WP_075621642.1 DegV family protein -
  BSA145_RS22540 - 699213..699632 (-) 420 WP_231120693.1 hypothetical protein -
  BSA145_RS03660 (BSA145_03610) - 699629..700570 (-) 942 WP_231120694.1 recombinase family protein -
  BSA145_RS03665 (BSA145_03615) - 700583..701230 (-) 648 WP_075621644.1 LexA family protein -
  BSA145_RS03670 (BSA145_03620) - 701427..701681 (+) 255 WP_075621645.1 helix-turn-helix transcriptional regulator -
  BSA145_RS03675 (BSA145_03625) - 701703..701951 (+) 249 WP_075621646.1 hypothetical protein -
  BSA145_RS22235 - 702252..702413 (+) 162 WP_186303771.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=181310 BSA145_RS03645 WP_008348273.1 696880..697569(+) (degU) [Bacillus safensis strain U14-5]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=181310 BSA145_RS03645 WP_008348273.1 696880..697569(+) (degU) [Bacillus safensis strain U14-5]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCTTAGCAACTAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment