Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BSA145_RS01060 Genome accession   NZ_CP015607
Coordinates   176952..178064 (-) Length   370 a.a.
NCBI ID   WP_041105878.1    Uniprot ID   A0AAP7UIW5
Organism   Bacillus safensis strain U14-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 171952..183064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA145_RS01045 (BSA145_01030) gyrA 171978..174482 (-) 2505 WP_034283649.1 DNA gyrase subunit A -
  BSA145_RS01050 (BSA145_01035) gyrB 174715..176631 (-) 1917 WP_034283656.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BSA145_RS01055 (BSA145_01040) remB 176689..176934 (-) 246 WP_034283648.1 extracellular matrix regulator RemB -
  BSA145_RS01060 (BSA145_01045) recF 176952..178064 (-) 1113 WP_041105878.1 DNA replication/repair protein RecF Machinery gene
  BSA145_RS01065 (BSA145_01050) yaaA 178081..178296 (-) 216 WP_008360916.1 S4 domain-containing protein YaaA -
  BSA145_RS01070 (BSA145_01055) dnaN 178447..179583 (-) 1137 WP_024424074.1 DNA polymerase III subunit beta -
  BSA145_RS01075 (BSA145_01060) dnaA 179780..181120 (-) 1341 WP_024424073.1 chromosomal replication initiator protein DnaA -
  BSA145_RS01080 rpmH 181741..181875 (+) 135 WP_073208224.1 50S ribosomal protein L34 -
  BSA145_RS01085 (BSA145_01065) rnpA 181954..182313 (+) 360 WP_075621346.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42559.64 Da        Isoelectric Point: 7.3663

>NTDB_id=181303 BSA145_RS01060 WP_041105878.1 176952..178064(-) (recF) [Bacillus safensis strain U14-5]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQSDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLREREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=181303 BSA145_RS01060 WP_041105878.1 176952..178064(-) (recF) [Bacillus safensis strain U14-5]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCATTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTTTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAATCGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTGGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGAGAGAGAAATAGACCGAGGGGTGACACTGTGGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGCCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCTATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGGCGAGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832

Multiple sequence alignment