Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   A3K93_RS11610 Genome accession   NZ_CP015594
Coordinates   2404751..2406316 (+) Length   521 a.a.
NCBI ID   WP_067731355.1    Uniprot ID   A0A172YSE2
Organism   Acinetobacter sp. NCu2D-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2399751..2411316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K93_RS11590 (A3K93_11590) - 2400268..2401572 (+) 1305 WP_067731351.1 homoserine dehydrogenase -
  A3K93_RS11595 (A3K93_11595) thrC 2401630..2402769 (+) 1140 WP_067731352.1 threonine synthase -
  A3K93_RS11600 (A3K93_11600) - 2402831..2403877 (-) 1047 WP_269465703.1 D-alanyl-D-alanine endopeptidase -
  A3K93_RS11605 (A3K93_11605) - 2404095..2404730 (+) 636 WP_067731354.1 response regulator -
  A3K93_RS11610 (A3K93_11610) pilS 2404751..2406316 (+) 1566 WP_067731355.1 ATP-binding protein Regulator
  A3K93_RS11615 (A3K93_11615) pilR 2406334..2407749 (+) 1416 WP_067731356.1 sigma-54 dependent transcriptional regulator Regulator
  A3K93_RS11620 (A3K93_11620) - 2407754..2408926 (-) 1173 WP_067731357.1 S41 family peptidase -
  A3K93_RS11625 (A3K93_11625) gpmI 2408943..2410493 (-) 1551 WP_067731358.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59046.33 Da        Isoelectric Point: 6.3133

>NTDB_id=181262 A3K93_RS11610 WP_067731355.1 2404751..2406316(+) (pilS) [Acinetobacter sp. NCu2D-2]
MPQRSIYSELNQYHLGLWYNAYRLIISIGLLIVFLLTYSDANGEFQFPLLYGYVLATFVVVSSIQLLTIRLIKNYVSQQL
TIIFFTDLCALSLMTLATNGPNLNLSLLFVITIFSASLLLDSKKSLVITLISVISVVYQHLISSIFEGANFSTIGNGTLL
AFLFFVVYGTGQIAVKRFQILENLNFSQSIELNRLQNVNRYILEQIETGYLVLDENCHVVLSNPAACQLLGISPMYAQNK
FPLYQSQPDLFELIKFEDLANGERFQFESQQSRYNIHVRVQKLIVPHQTLMLLVLEDAQKLNQQVQQLKLASLGQLSASI
AHEIRNPLAAIVQANELLTDSDQEQQQALSSMIAKQAQRIDRIIQDTLNMVKNKEMHPVLIKLNEFLPNFIAEDLSDIAN
QIKLHMDIPLAIQFDEAQLRQVLINLIRNAIRHNDPEVPYIEVKIHPNQHNVWIDVRDFGAGVAPHDLASLFKPFFSTSI
NGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISSRRVVV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=181262 A3K93_RS11610 WP_067731355.1 2404751..2406316(+) (pilS) [Acinetobacter sp. NCu2D-2]
ATGCCGCAGCGCTCGATTTATTCTGAGTTAAATCAATACCATTTAGGCTTATGGTACAACGCTTATCGGCTAATTATTAG
CATTGGTTTACTGATTGTTTTTTTGCTGACCTATTCAGATGCAAATGGCGAATTTCAGTTTCCTCTGTTATATGGCTATG
TACTGGCTACTTTTGTCGTGGTCAGTTCGATCCAACTACTGACCATCCGCTTAATCAAAAACTATGTTAGCCAGCAACTG
ACAATCATCTTTTTTACGGATTTATGTGCTTTAAGTTTAATGACCCTAGCTACGAATGGGCCAAACTTAAATCTCAGTCT
ACTGTTTGTCATCACGATATTTTCAGCATCTTTATTATTAGACTCGAAAAAGTCTCTAGTGATTACCCTGATCTCGGTAA
TTTCTGTAGTTTATCAGCACTTAATTAGCTCTATTTTTGAAGGGGCGAATTTCTCTACCATTGGTAATGGCACCCTGCTC
GCCTTTTTATTTTTTGTAGTCTATGGCACAGGGCAAATCGCAGTTAAACGCTTCCAGATTTTGGAAAATTTAAACTTTTC
GCAGTCAATCGAACTCAATCGACTGCAAAACGTAAACCGTTATATCTTAGAACAAATTGAAACGGGCTATTTAGTGTTAG
ATGAAAACTGTCATGTGGTGCTAAGTAACCCTGCTGCATGTCAATTACTCGGTATATCGCCAATGTATGCACAAAATAAA
TTTCCGTTGTATCAGTCGCAGCCAGATCTATTTGAGCTAATTAAATTTGAAGATTTGGCCAATGGTGAACGCTTCCAATT
TGAATCACAACAAAGCCGCTATAACATTCATGTGCGGGTACAAAAACTGATTGTTCCACATCAAACACTAATGCTCTTGG
TCCTTGAAGATGCACAAAAACTCAATCAACAAGTACAGCAACTGAAACTTGCATCTTTAGGACAATTGTCTGCCAGTATT
GCCCATGAAATTCGTAACCCTTTGGCAGCCATTGTTCAAGCCAATGAATTATTGACAGATAGCGATCAAGAGCAACAACA
AGCACTGAGCAGCATGATTGCTAAGCAAGCTCAGCGTATTGATCGAATCATTCAAGATACCTTGAATATGGTCAAAAATA
AGGAAATGCACCCTGTACTGATCAAATTAAATGAATTTCTGCCAAATTTTATTGCGGAAGATTTATCGGATATTGCGAAC
CAAATCAAATTACATATGGATATACCACTTGCGATTCAATTTGATGAAGCACAGCTCAGACAGGTGTTGATTAATTTAAT
CCGAAATGCCATCCGGCATAACGATCCAGAAGTGCCTTATATCGAAGTAAAAATTCATCCAAATCAGCATAATGTTTGGA
TTGATGTACGTGACTTTGGTGCTGGGGTAGCTCCCCATGATCTCGCATCATTATTCAAGCCATTTTTTAGTACATCTATT
AACGGTACAGGTTTGGGATTATATTTATCCCATAGTTTTTGTGAAGCAAATCAAGCACAACTGAATTATATACAACAAGA
ACAAGGCGCCTGCTTCCGTATCAGTAGTCGGCGCGTCGTCGTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172YSE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.455

96.545

0.555

Multiple sequence alignment