Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   A3K93_RS10270 Genome accession   NZ_CP015594
Coordinates   2152107..2152970 (-) Length   287 a.a.
NCBI ID   WP_171255106.1    Uniprot ID   -
Organism   Acinetobacter sp. NCu2D-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2147107..2157970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K93_RS10250 (A3K93_10250) miaB 2147430..2148887 (+) 1458 WP_067731145.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  A3K93_RS10255 (A3K93_10255) - 2148926..2150008 (+) 1083 WP_067731146.1 PhoH family protein -
  A3K93_RS10260 (A3K93_10260) ybeY 2150024..2150506 (+) 483 WP_067731147.1 rRNA maturation RNase YbeY -
  A3K93_RS10265 (A3K93_10265) - 2150825..2152054 (+) 1230 WP_067731623.1 transposase -
  A3K93_RS10270 (A3K93_10270) tonB2 2152107..2152970 (-) 864 WP_171255106.1 energy transducer TonB Machinery gene
  A3K93_RS10275 (A3K93_10275) - 2153228..2153899 (+) 672 WP_067731149.1 hypothetical protein -
  A3K93_RS10280 (A3K93_10280) - 2154064..2154780 (+) 717 WP_067731150.1 DUF3108 domain-containing protein -
  A3K93_RS10285 (A3K93_10285) - 2154871..2155446 (+) 576 WP_067731151.1 xanthine phosphoribosyltransferase -
  A3K93_RS10290 (A3K93_10290) - 2155478..2155672 (-) 195 WP_067731152.1 hypothetical protein -
  A3K93_RS10295 (A3K93_10295) - 2155685..2156107 (+) 423 WP_067731153.1 hypothetical protein -
  A3K93_RS10300 (A3K93_10300) wrbA 2156128..2156718 (-) 591 WP_067731154.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32667.13 Da        Isoelectric Point: 7.4211

>NTDB_id=181248 A3K93_RS10270 WP_171255106.1 2152107..2152970(-) (tonB2) [Acinetobacter sp. NCu2D-2]
MPLVKSWWKDPVFSTAVIIAAILHTLILTLQFGMPQENSAQTKEIAISLRTAEKEPDHVDFLAQTHQDGSGQFREAHKMS
SDMPAPMIEQKAGEEQQEQQSTDLTQQQQELSFEEKVLMTTLSWQKQAEDAKRKKIQEQLNSQFQAKAAMVASLEAQYLQ
RQKNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNKFYPEAARAQRLSGEVRLMVILNSNGGIRAIRLIDSSGHA
ILDEAAKASVRKSAPYGCFDANMKEISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 864 bp        

>NTDB_id=181248 A3K93_RS10270 WP_171255106.1 2152107..2152970(-) (tonB2) [Acinetobacter sp. NCu2D-2]
ATGCCATTGGTTAAGTCATGGTGGAAAGATCCTGTTTTTAGTACAGCTGTAATCATTGCTGCGATCTTACACACGCTGAT
TTTGACCCTGCAATTTGGTATGCCTCAAGAAAATAGCGCTCAAACCAAAGAAATTGCCATTAGTCTAAGAACAGCTGAAA
AAGAGCCAGATCATGTCGATTTCTTGGCGCAGACACATCAGGATGGTTCAGGGCAATTCCGTGAAGCCCATAAAATGTCG
AGTGACATGCCTGCACCGATGATTGAACAAAAAGCAGGGGAAGAGCAGCAAGAACAACAAAGCACAGATTTGACCCAACA
ACAGCAAGAACTGAGTTTTGAAGAAAAAGTCTTGATGACGACCTTAAGTTGGCAGAAACAAGCCGAAGATGCGAAACGTA
AAAAGATTCAGGAACAGCTCAATAGTCAATTTCAAGCTAAGGCTGCGATGGTGGCAAGTTTAGAAGCACAATATTTACAG
CGACAAAAAAACTTTAGTCGTCAGCAAAAAATCAAAACCGTCGATGGAATTCAAGCGAAACAAGATGTTTCTGCGGCGTA
TTTAGAAAAGTTCCGTCAAAAAGTCGAATTCTATGGGAATAAGTTTTATCCCGAAGCAGCACGTGCTCAGCGATTATCGG
GTGAAGTGCGTTTGATGGTGATTCTGAACTCCAATGGTGGTATTCGCGCGATTCGACTCATTGATTCTTCAGGTCATGCG
ATTTTAGATGAAGCAGCTAAAGCCTCAGTACGTAAGTCTGCGCCGTATGGATGCTTCGATGCCAATATGAAGGAAATTTC
TGAGCTACGCATTATTCGCACATGGCGTTTTGATCCTGCGGAGGCAGAATTTGAAGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(200-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

69.751

97.909

0.683

Multiple sequence alignment